SRR3550820_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550820_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	515866
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35679	6.916330985178322	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	772	0.14965126602644874	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	669	0.12968484063690958	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	635	0.12309398177045977	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	559	0.10836147371604254	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	90	0.0	45.000004	5
GTTAGCG	40	6.8030204E-9	45.000004	1
CACGACG	20	7.0296664E-4	45.000004	26
TACGGGT	20	7.0296664E-4	45.000004	4
TACTAGG	20	7.0296664E-4	45.000004	2
CTACGAA	55	1.8189894E-12	45.0	11
TACGAAT	55	1.8189894E-12	45.0	12
TCGAGCG	25	3.887806E-5	45.0	32
GCTACGA	55	1.8189894E-12	45.0	10
CGTTTTT	20295	0.0	44.456764	1
GGCGATA	85	0.0	42.352943	8
ATGGGTA	80	0.0	42.187504	5
CGAATAT	60	3.6379788E-12	41.250004	14
GTTTTTT	22375	0.0	40.43464	2
GCGATGA	45	1.9246727E-8	40.000004	9
ATTGCGG	40	3.4532786E-7	39.375004	2
AATCGCG	35	6.2415947E-6	38.571426	1
AATGGGT	65	9.094947E-12	38.07692	4
ACCTATG	65	9.094947E-12	38.07692	34
GCGGGAT	95	0.0	37.894737	5