SRR3550816_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550816_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	541436
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30111	5.561322113786302	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	932	0.1721348414217008	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	918	0.1695491249196581	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	679	0.1254072503490717	No Hit
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	631	0.11654193662778242	TruSeq Adapter, Index 21 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	629	0.11617254855606203	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	578	0.10675315272719213	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	573	0.10582968254789116	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCGG	30	2.163366E-6	45.000004	2
TTGCGAG	20	7.029975E-4	45.000004	1
TGTGTCG	20	7.029975E-4	45.000004	1
CTGGCGA	20	7.029975E-4	45.000004	14
CGCGGGT	25	3.888063E-5	45.0	4
TAGTTCG	35	1.2103374E-7	45.0	1
CGTTTTT	19970	0.0	44.63946	1
ACGGGCG	55	6.002665E-11	40.90909	5
TAGGGCG	110	0.0	40.90909	5
GTTTTTT	22235	0.0	40.102318	2
CGGGTGA	45	1.9250365E-8	40.0	6
TCGTTGG	40	3.453697E-7	39.375004	2
TACGGGT	40	3.453697E-7	39.375004	4
AGACACG	40	3.453697E-7	39.375004	24
GCGAAAG	35	6.2421695E-6	38.571426	1
TACTAGG	35	6.2421695E-6	38.571426	2
TTACGGG	65	9.094947E-12	38.07692	3
CCCGCAC	125	0.0	37.8	33
CGGGTCA	30	1.1391243E-4	37.500004	6
TGCGTAG	60	1.546141E-10	37.500004	1