SRR3550814_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550814_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394607
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29191	7.397486613263323	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGC	1166	0.2954838611580636	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	1153	0.29218944418117265	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	1108	0.28078569310731943	No Hit
CCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	1066	0.2701421921050564	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCG	987	0.2501222735531808	No Hit
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	684	0.17333701632256904	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	607	0.15382393115175352	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	453	0.11479776081012248	No Hit
CGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	427	0.10820892685634062	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	420	0.10643501002263012	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	402	0.10187350959308883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTCTAC	25	3.8861333E-5	45.000004	41
TAGCTAG	25	3.8861333E-5	45.000004	1
CGCATAT	20	7.027651E-4	45.0	26
ATTACGG	20	7.027651E-4	45.0	2
TCGATGG	20	7.027651E-4	45.0	2
GCTTGAC	20	7.027651E-4	45.0	43
TATTGCG	20	7.027651E-4	45.0	1
GAGCGTC	20	7.027651E-4	45.0	15
CGCTAAG	20	7.027651E-4	45.0	3
TCGCTAA	20	7.027651E-4	45.0	2
TCATCGC	20	7.027651E-4	45.0	22
CATCGCA	20	7.027651E-4	45.0	23
ATGCGAG	20	7.027651E-4	45.0	1
GCTCATG	20	7.027651E-4	45.0	1
GAGTAAG	30	2.1618653E-6	44.999996	1
GGCCGAT	30	2.1618653E-6	44.999996	8
ATAGCGG	30	2.1618653E-6	44.999996	2
CGTTTTT	14490	0.0	44.673916	1
TAGGGCG	75	0.0	42.0	5
ACGGGCT	70	0.0	41.785717	5