SRR3550809_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550809_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	747035
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54514	7.2973823180975455	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1089	0.14577630231515257	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	1005	0.13453184924401132	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	896	0.11994083275883995	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	796	0.10655457910271943	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	777	0.10401119090805652	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	748	0.10012917734778157	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTCGTA	35	1.2111559E-7	45.000004	28
ATGCGAG	30	2.1644773E-6	45.000004	1
CGGTCTA	55	1.8189894E-12	45.000004	31
TCGAGTA	20	7.0316985E-4	45.000004	43
GCGTACG	20	7.0316985E-4	45.000004	1
ATCGAGT	20	7.0316985E-4	45.000004	42
TACGTAG	20	7.0316985E-4	45.000004	1
GTACGAG	25	3.8894897E-5	45.0	1
CGTTTTT	28670	0.0	44.591908	1
TCACGAC	60	3.6379788E-12	41.250004	25
GTTTTTT	31505	0.0	40.75067	2
TACGGGA	150	0.0	40.500004	4
GTGCTAG	650	0.0	39.115387	1
TAGCCGT	35	6.245351E-6	38.57143	44
TGTTGCG	35	6.245351E-6	38.57143	1
CGACGGT	65	9.094947E-12	38.076927	28
ACGGTCT	65	9.094947E-12	38.076927	30
CGTTAGG	95	0.0	37.894737	2
TACCACG	30	1.139539E-4	37.500004	34
TAGCGAG	30	1.139539E-4	37.500004	1