SRR3550807_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550807_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	533496
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35518	6.657594433697723	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	831	0.15576499167753835	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	720	0.13495883755454585	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	702	0.1315848666156822	No Hit
CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	628	0.1177140972003539	Illumina PCR Primer Index 5 (96% over 25bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	619	0.11602711173092208	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	571	0.10702985589395235	RNA PCR Primer, Index 33 (96% over 27bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	553	0.1036558849550887	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	25	3.8879847E-5	45.0	1
TTATCGG	20	7.0298836E-4	45.0	30
TAGCCGT	20	7.0298836E-4	45.0	44
GCGATAT	20	7.0298836E-4	45.0	9
AATTACG	25	3.8879847E-5	45.0	1
CGGTCTA	20	7.0298836E-4	45.0	31
ATTATCG	20	7.0298836E-4	45.0	30
GTAACGG	35	1.2102828E-7	45.0	2
TGCGTAG	20	7.0298836E-4	45.0	1
CGTTTTT	21995	0.0	44.49875	1
GGCGATA	70	0.0	41.785713	8
ACGGGAT	60	3.6379788E-12	41.249996	5
TACGGGA	110	0.0	40.909092	4
GTTTTTT	24425	0.0	40.172977	2
CTAGGGT	45	1.9250365E-8	40.0	4
GCTACGA	85	0.0	39.705883	10
CGGGTAT	40	3.4535697E-7	39.375	6
ATTACGG	40	3.4535697E-7	39.375	2
ACGGGTC	40	3.4535697E-7	39.375	5
GCAATAG	35	6.2419967E-6	38.571426	1