SRR3550802_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550802_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	710422
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51471	7.2451303591386536	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1074	0.15117775068902709	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	1012	0.1424505434797909	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	897	0.12626298172072373	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	832	0.11711349029168579	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	715	0.10064440571941748	Illumina PCR Primer Index 7 (96% over 27bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGCG	20	7.031465E-4	45.0	1
GACCGAC	20	7.031465E-4	45.0	9
TAACGAT	25	3.889296E-5	45.0	17
ATCGTTG	50	2.1827873E-11	45.0	23
ATAACGA	25	3.889296E-5	45.0	16
CGTTTTT	27465	0.0	44.58219	1
TTACACG	70	0.0	41.785717	34
GTTTTTT	30045	0.0	40.963554	2
AATCGTT	55	6.002665E-11	40.909092	22
ACAACGA	45	1.9264917E-8	40.0	13
CTACGAA	130	0.0	39.80769	11
TAGCCGT	85	0.0	39.705883	44
CGATGCG	40	3.4557343E-7	39.375	10
CGAGATA	95	0.0	37.894737	19
GGCCGAT	60	1.546141E-10	37.499996	8
ACGATTC	30	1.1394832E-4	37.499996	19
CACTCGT	30	1.1394832E-4	37.499996	22
GTGCTAA	30	1.1394832E-4	37.499996	25
TCGTAAG	30	1.1394832E-4	37.499996	1
CGGTCTA	30	1.1394832E-4	37.499996	31