SRR3550800_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550800_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	336764
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC	3302	0.9805086054328848	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG	3042	0.9033032034302955	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	2607	0.7741326270028863	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	1695	0.5033198322861113	No Hit
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	1055	0.3132757658181991	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	804	0.23874285850031476	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	736	0.2185506764380991	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCT	616	0.18291741397536554	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCACATGTT	556	0.16510078274399878	No Hit
GAACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCT	500	0.14847192692805644	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCC	458	0.1360002850660997	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTA	447	0.13273390267368246	No Hit
TCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	444	0.1318430711121141	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTC	414	0.12293475549643074	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAACTA	35	1.2085002E-7	45.000004	38
CGACCCA	35	1.2085002E-7	45.000004	15
CGACAGG	35	1.2085002E-7	45.000004	2
CCGACCC	35	1.2085002E-7	45.000004	14
ACAACGA	20	7.026176E-4	45.0	13
CCTTAGT	20	7.026176E-4	45.0	37
GCGACGA	20	7.026176E-4	45.0	5
AGATAGT	25	3.884912E-5	45.0	41
CGGCCTA	20	7.026176E-4	45.0	45
CGATTAT	20	7.026176E-4	45.0	10
CCAGACG	20	7.026176E-4	45.0	21
TCTACGG	20	7.026176E-4	45.0	2
GTTGTCG	20	7.026176E-4	45.0	37
AACGAGC	20	7.026176E-4	45.0	15
GTTCACG	20	7.026176E-4	45.0	1
TTTGCGG	50	2.1827873E-11	45.0	2
CAATGCG	20	7.026176E-4	45.0	1
GGATTAC	20	7.026176E-4	45.0	8
CGGTTGG	30	2.1609158E-6	44.999996	2
GCTACGA	30	2.1609158E-6	44.999996	10