SRR3550794_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550794_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	657411
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCG	10897	1.6575627727555517	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC	10894	1.65710643722116	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC	10696	1.626988291951306	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	3446	0.5241774171712977	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT	2482	0.3775415987867559	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT	1965	0.29889977502658155	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCTCTCAT	1959	0.2979871039577981	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTC	1679	0.2553957874145702	No Hit
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1594	0.24246628060680459	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTA	1519	0.2310578922470114	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1423	0.2164551551464761	No Hit
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	1061	0.1613906673298743	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTT	763	0.11606133758029603	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC	678	0.10313183077253042	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGT	35	1.2108649E-7	45.000004	4
CGAGGGT	35	1.2108649E-7	45.000004	4
GAACGAC	25	3.8889768E-5	45.000004	1
CGTCCAT	25	3.8889768E-5	45.000004	43
CCATTAC	50	2.1827873E-11	45.000004	6
TCGCCAG	40	6.8066583E-9	45.0	25
CGAACTC	20	7.031082E-4	45.0	12
ATGATCG	20	7.031082E-4	45.0	1
TCGTGCA	20	7.031082E-4	45.0	42
TTGCGTT	20	7.031082E-4	45.0	28
TTAACGA	20	7.031082E-4	45.0	16
TGACTCG	20	7.031082E-4	45.0	43
ACGAACT	20	7.031082E-4	45.0	11
ACGGGTA	65	0.0	44.999996	5
TAAGACG	30	2.164079E-6	44.999996	1
CACGTGA	100	0.0	42.750004	43
CGATGAA	615	0.0	40.97561	19
TTAACGG	50	1.0804797E-9	40.500004	2
CCAGTCG	45	1.9261279E-8	40.0	28
GGTTACG	45	1.9261279E-8	40.0	1