SRR3550789_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550789_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587837
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1927	0.3278119614791175	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1264	0.21502559382958203	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC	1240	0.2109428293897798	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC	1162	0.1976738449604227	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG	1104	0.18780716423090074	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	959	0.16314046240709584	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	626	0.10649210580484045	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	626	0.10649210580484045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	145	0.0	45.000004	14
CGGTCGA	20	7.03047E-4	45.000004	31
CGCACGA	20	7.03047E-4	45.000004	39
GGTCTCG	20	7.03047E-4	45.000004	45
GCGCTAA	20	7.03047E-4	45.000004	23
TAACTCG	20	7.03047E-4	45.000004	34
TATAGCG	30	2.1636843E-6	44.999996	1
TACGAAT	150	0.0	43.5	12
GCGATCA	50	1.0804797E-9	40.499996	9
CCTATGC	145	0.0	40.34483	35
ACGGATG	45	1.9255822E-8	40.0	37
GCGATAT	45	1.9255822E-8	40.0	9
CCAACGG	45	1.9255822E-8	40.0	2
TGCGGGT	85	0.0	39.705883	4
TATACTG	170	0.0	39.705883	18
CTACGAA	165	0.0	39.545456	11
GCTACGA	165	0.0	39.545456	10
GTATGCG	40	3.45437E-7	39.375004	1
TACGTAG	40	3.45437E-7	39.375004	1
AGACCTA	150	0.0	39.0	32