SRR3550786_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550786_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	606890
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	1555	0.25622435696748996	TruSeq Adapter, Index 23 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	1502	0.24749130814480386	TruSeq Adapter, Index 23 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1286	0.21190001482970555	No Hit
CTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGCT	991	0.16329153553362225	Illumina PCR Primer Index 5 (95% over 24bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG	672	0.11072846809141691	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC	628	0.10347838982352651	TruSeq Adapter, Index 23 (95% over 21bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	625	0.10298406630526126	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC	624	0.10281929179917282	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	30	2.1638007E-6	45.000004	1
CCCCGAT	30	2.1638007E-6	45.000004	40
CGTAAGG	35	1.2106648E-7	45.000004	2
CACAACG	45	3.8380676E-10	45.000004	12
TGCGTAG	45	3.8380676E-10	45.000004	1
CCCGATC	30	2.1638007E-6	45.000004	41
CGTCGAC	20	7.0306525E-4	45.0	16
CAGTCGA	25	3.8886217E-5	45.0	12
CGACTAG	25	3.8886217E-5	45.0	24
TCGACGG	50	2.1827873E-11	45.0	2
TATAACG	20	7.0306525E-4	45.0	18
CGATAGA	20	7.0306525E-4	45.0	10
TAATGCG	20	7.0306525E-4	45.0	1
ACGACTA	20	7.0306525E-4	45.0	23
TACCGGT	20	7.0306525E-4	45.0	40
ACACGAC	75	0.0	42.0	26
CACGACC	75	0.0	42.0	27
TTGTGCG	70	0.0	41.785717	1
GGCGATA	180	0.0	41.250004	8
ACGCCGG	95	0.0	40.263157	27