SRR3550784_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550784_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	697238
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	5651	0.8104836512066181	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	5284	0.7578473921386959	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	4298	0.6164322655965395	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1998	0.28655925236432894	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	1721	0.2468310677272323	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCT	983	0.14098485739446215	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGTACCGT	980	0.14055458824676798	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	951	0.13639531981905748	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	818	0.11732005427128184	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	802	0.11502528548357949	No Hit
GGAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	756	0.10842782521893529	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTA	726	0.10412513374199339	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	25	3.8892213E-5	45.0	1
TTCCGTC	25	3.8892213E-5	45.0	31
CCCGTCA	20	7.0313754E-4	45.0	41
TATTACG	20	7.0313754E-4	45.0	1
CCGCCTA	20	7.0313754E-4	45.0	28
CGTCAGC	20	7.0313754E-4	45.0	36
CGATATA	20	7.0313754E-4	45.0	10
AGTACGT	20	7.0313754E-4	45.0	32
AGTCGAT	20	7.0313754E-4	45.0	11
CTAGACG	30	2.1642682E-6	44.999996	1
ACGATTG	30	2.1642682E-6	44.999996	1
GCGTAAG	70	0.0	41.785717	1
CGTAAGG	115	0.0	41.08696	2
TACGAAT	150	0.0	40.5	12
GCTACGA	145	0.0	40.344826	10
GCGCTAG	45	1.9264917E-8	40.0	1
TACGGGA	205	0.0	39.512196	4
ATCCGCG	40	3.455607E-7	39.375	1
GCGTATG	40	3.455607E-7	39.375	1
CGATGAA	375	0.0	39.0	19