SRR3550777_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550777_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	754917
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGC	4062	0.5380723973628889	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTC	3868	0.512374208025518	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCG	3601	0.47700608146326023	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3165	0.41925138790092153	No Hit
GCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	1875	0.24837167529675447	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	972	0.12875587647383752	TruSeq Adapter, Index 13 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCT	938	0.12425207009512304	No Hit
CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT	874	0.1157743169116605	TruSeq Adapter, Index 19 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAACC	20	7.031746E-4	45.0	33
CGCGAAG	20	7.031746E-4	45.0	16
TATTGCG	20	7.031746E-4	45.0	1
CGGATCG	25	3.889529E-5	45.0	21
ACGTGCG	25	3.889529E-5	45.0	1
TCGTAAG	20	7.031746E-4	45.0	1
CCCGATC	25	3.889529E-5	45.0	41
CGTAAGG	65	0.0	41.53846	2
AACGGGC	85	0.0	39.705883	4
CGTTTTT	1880	0.0	39.494682	1
TTTGCGC	35	6.24544E-6	38.571426	13
CAACTCG	35	6.24544E-6	38.571426	36
GCGTACG	35	6.24544E-6	38.571426	1
CGAACGG	30	1.1395507E-4	37.500004	2
AACGGCT	30	1.1395507E-4	37.500004	24
GTTAACG	30	1.1395507E-4	37.500004	1
TATTACG	30	1.1395507E-4	37.500004	1
ACTCGTC	30	1.1395507E-4	37.500004	38
ACCGTAC	30	1.1395507E-4	37.500004	17
CGCGTTC	30	1.1395507E-4	37.500004	38