SRR3550775_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550775_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	372857
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC	1184	0.3175480143862124	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTC	929	0.2491571835851278	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGC	827	0.22180085126469398	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCG	762	0.20436789439382927	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	732	0.19632191429958404	No Hit
CCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC	720	0.19310352226188593	No Hit
CTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGCT	511	0.13704986093864405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	20	7.0271484E-4	45.000004	6
CGATTGT	20	7.0271484E-4	45.000004	10
TATGCGG	40	6.7939254E-9	45.000004	2
CGTTAGG	60	0.0	45.000004	2
ATGCGCG	30	2.1615415E-6	45.000004	1
TGCGTAG	40	6.7939254E-9	45.000004	1
GCGAAAG	25	3.8857186E-5	45.0	1
GCGTTAG	50	2.1827873E-11	45.0	1
ACGGGCG	70	0.0	41.785717	5
CGAATAT	45	1.922308E-8	40.0	14
GCTACGA	45	1.922308E-8	40.0	10
GGCGATA	130	0.0	39.80769	8
AAATCGA	40	3.4498407E-7	39.375004	15
CGTTGAT	40	3.4498407E-7	39.375004	25
CACGAGG	40	3.4498407E-7	39.375004	2
CGCAAGG	80	0.0	39.375004	2
TAATCGT	40	3.4498407E-7	39.375004	21
TCGTCTG	75	0.0	39.0	18
ATGGGCG	105	0.0	38.57143	5
TTTCGTC	70	0.0	38.57143	16