##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550767_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 670795 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16130561497924 31.0 31.0 33.0 28.0 34.0 2 31.19887894215073 31.0 31.0 34.0 28.0 34.0 3 30.958577508776898 31.0 31.0 34.0 27.0 34.0 4 34.72314045274637 35.0 35.0 37.0 32.0 37.0 5 34.79636699736879 35.0 35.0 37.0 32.0 37.0 6 35.01567692066876 36.0 35.0 37.0 32.0 37.0 7 35.40105844557577 37.0 35.0 37.0 33.0 37.0 8 35.250161375681095 37.0 35.0 37.0 32.0 37.0 9 37.18020855850148 39.0 37.0 39.0 34.0 39.0 10 36.53452694191221 38.0 35.0 39.0 32.0 39.0 11 36.795951072980564 39.0 37.0 39.0 33.0 39.0 12 36.94805864682951 39.0 37.0 39.0 33.0 39.0 13 37.039231061650725 39.0 37.0 39.0 33.0 39.0 14 38.13515455541559 40.0 37.0 41.0 33.0 41.0 15 38.3021668318935 40.0 38.0 41.0 34.0 41.0 16 38.253046012567175 40.0 37.0 41.0 34.0 41.0 17 38.12069112023793 40.0 37.0 41.0 33.0 41.0 18 38.00362703955754 39.0 37.0 41.0 34.0 41.0 19 37.821444703672505 39.0 37.0 41.0 34.0 41.0 20 37.807641678903394 39.0 36.0 41.0 34.0 41.0 21 37.75581809643781 39.0 36.0 41.0 33.0 41.0 22 37.86764510767075 40.0 36.0 41.0 33.0 41.0 23 37.90818953629648 40.0 36.0 41.0 34.0 41.0 24 37.87381688891539 40.0 36.0 41.0 34.0 41.0 25 37.457873120700064 39.0 35.0 41.0 33.0 41.0 26 37.54264417594049 39.0 35.0 41.0 33.0 41.0 27 37.61897599117465 39.0 35.0 41.0 33.0 41.0 28 37.485562653269625 39.0 35.0 41.0 33.0 41.0 29 37.43939504617655 40.0 35.0 41.0 33.0 41.0 30 37.13168404654179 39.0 35.0 41.0 32.0 41.0 31 37.02029830276016 39.0 35.0 41.0 32.0 41.0 32 36.847065049679856 39.0 35.0 41.0 31.0 41.0 33 36.69308208916286 39.0 35.0 41.0 31.0 41.0 34 36.46666567282106 39.0 35.0 41.0 30.0 41.0 35 36.40327372744281 39.0 35.0 41.0 30.0 41.0 36 36.24677584060704 39.0 35.0 41.0 29.0 41.0 37 36.256708830566716 39.0 35.0 41.0 30.0 41.0 38 36.08633785284625 39.0 35.0 41.0 29.0 41.0 39 35.993667215766365 39.0 35.0 41.0 28.0 41.0 40 35.9229719959153 39.0 35.0 41.0 28.0 41.0 41 35.758209288978 39.0 35.0 41.0 27.0 41.0 42 35.82201417720764 39.0 35.0 41.0 27.0 41.0 43 35.817030538391016 39.0 35.0 41.0 27.0 41.0 44 35.81031611744274 39.0 35.0 41.0 27.0 41.0 45 35.794822561289216 39.0 35.0 41.0 27.0 41.0 46 35.671844602300254 39.0 35.0 41.0 26.0 41.0 47 35.653165274040504 39.0 35.0 41.0 27.0 41.0 48 35.57166943701131 39.0 35.0 40.0 26.0 41.0 49 35.53522163999433 39.0 35.0 40.0 26.0 41.0 50 35.44037746256308 39.0 35.0 40.0 26.0 41.0 51 34.362271632913185 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 18.0 9 32.0 10 41.0 11 34.0 12 16.0 13 29.0 14 45.0 15 47.0 16 64.0 17 130.0 18 276.0 19 484.0 20 870.0 21 1499.0 22 2231.0 23 3288.0 24 4946.0 25 7420.0 26 10111.0 27 10483.0 28 10360.0 29 10181.0 30 11372.0 31 13829.0 32 17231.0 33 23911.0 34 39247.0 35 47609.0 36 53264.0 37 81555.0 38 147875.0 39 172261.0 40 34.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.26251686431772 19.92486527180435 22.86958012507547 17.943037738802467 2 36.9248429102781 23.498982550555684 23.415648596068845 16.16052594309737 3 29.57699446179533 23.055478946623037 32.01529528395412 15.352231307627518 4 26.40762080814556 24.20635216422305 31.909003495851934 17.477023531779455 5 24.3297877891159 27.863207090094587 29.157939459894607 18.64906566089491 6 22.837975834643967 32.78661886269278 29.38975394867284 14.985651353990415 7 74.4592610260959 5.267182969461609 15.540366281799953 4.733189722642536 8 76.08658382963499 5.406867970095186 13.94017546344263 4.566372736827198 9 69.88707429244404 7.0991882765971726 15.729842947547311 7.283894483411474 10 33.22043247191765 32.02304727972033 21.665188321320226 13.091331927041793 11 25.732899022801302 25.01539218390119 31.50947756020841 17.742231233089097 12 24.271945974552583 21.228542252103846 34.799901609284504 19.699610164059063 13 22.464240192607278 21.91593556898904 36.629819840636856 18.99000439776683 14 18.175746688630653 27.22322020885666 34.423482584097975 20.177550518414716 15 17.482390298079146 26.04521500607488 37.27502441133282 19.197370284513152 16 20.37135041257016 25.981559194686906 34.804075760850935 18.843014631892007 17 19.839593318375957 26.141518645785972 32.449257970020646 21.569630065817424 18 20.905343659389235 25.445627948926276 32.7936254742507 20.85540291743379 19 20.546217547835035 27.77525175351635 31.312397975536488 20.36613272311213 20 22.638809174188836 25.841725117211666 32.06806848590106 19.45139722269844 21 22.162061434566446 26.906431920333336 32.46774349838624 18.463763146713973 22 20.7775848060883 23.95784106917911 32.844460677256095 22.420113447476503 23 19.960196483277308 26.033437935583898 32.91437771599371 21.09198786514509 24 20.727047756766225 24.544756594786783 33.49309401531019 21.2351016331368 25 20.750005590381562 27.19862252998308 30.6100969744855 21.44127490514986 26 19.3847598744773 26.665374667372298 31.752920042635978 22.196945415514428 27 21.098249092494726 25.668795980888348 30.885590977869544 22.347363948747383 28 19.475398594205384 26.245127050738304 32.167651816128625 22.11182253892769 29 20.610618743431303 24.374212687929994 31.520360169649447 23.49480839898926 30 21.384029397953174 23.959629991279005 31.308074747128405 23.348265863639416 31 22.4868998725393 25.081880455280675 29.70982192771264 22.721397744467385 32 22.584992434350283 25.670137672463273 30.969819393406333 20.77505049978011 33 22.87494689137516 25.155226261376427 30.208633039900416 21.761193807347997 34 21.124933847151514 24.980359126111555 32.22489732332531 21.669809703411623 35 20.300389835940933 25.630632309423895 31.53511877697359 22.53385907766158 36 21.091391557778458 27.192361302633444 30.436571530795547 21.27967560879255 37 20.793983258670682 26.709799566186394 32.03243912074479 20.46377805439814 38 20.943060100328715 26.807743051155718 30.67762878375659 21.57156806475898 39 22.440536974783655 24.408202207828026 31.758435885777324 21.392824931611 40 21.994946295067795 24.403282672053308 32.76067949224428 20.841091540634622 41 18.9904516282918 26.495427067882137 32.43285951743826 22.081261786387792 42 20.27609031075068 26.64763452321499 31.26022108095618 21.816054085078154 43 21.358090027504677 25.053854009048965 31.23651786313255 22.351538100313807 44 21.539814697485816 25.126752584619744 30.344442042650883 22.988990675243553 45 21.602725124665508 23.845138976885636 29.70952377402932 24.84261212441953 46 21.768349495747582 25.442944565776433 29.637966890033468 23.15073904844252 47 20.465865130181353 24.75406048047466 32.14812274987142 22.631951639472568 48 20.136703463800416 24.209631854739524 32.37934093128303 23.27432375017703 49 20.519532793178243 23.497789935822418 32.438226283737954 23.544450987261385 50 19.41457524280891 23.465589338024284 33.310325807437444 23.809509611729364 51 19.032193143956054 22.733622045483344 31.924507487384375 26.309677323176235 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 252.0 1 490.0 2 728.0 3 8481.0 4 16234.0 5 10582.5 6 4931.0 7 4749.5 8 4568.0 9 4485.0 10 4402.0 11 4296.5 12 4191.0 13 4023.0 14 3855.0 15 3734.5 16 3614.0 17 3492.5 18 3371.0 19 3163.5 20 2956.0 21 3094.5 22 3233.0 23 3491.0 24 3749.0 25 4171.5 26 5216.5 27 5839.0 28 7416.5 29 8994.0 30 10286.5 31 11579.0 32 13078.5 33 14578.0 34 17258.0 35 19938.0 36 21133.0 37 22328.0 38 24055.0 39 25782.0 40 27833.5 41 29885.0 42 32994.0 43 36103.0 44 38790.5 45 41478.0 46 54117.5 47 66757.0 48 65582.5 49 64408.0 50 62001.0 51 59594.0 52 51894.5 53 44195.0 54 39194.0 55 34193.0 56 31614.5 57 29036.0 58 27060.5 59 25085.0 60 24220.0 61 23355.0 62 20713.0 63 18071.0 64 14919.5 65 11768.0 66 9328.5 67 6889.0 68 5485.5 69 4082.0 70 3265.5 71 2449.0 72 1995.0 73 1541.0 74 1284.0 75 792.5 76 558.0 77 418.0 78 278.0 79 250.5 80 223.0 81 136.5 82 50.0 83 43.5 84 37.0 85 20.5 86 4.0 87 6.0 88 8.0 89 4.5 90 1.0 91 2.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 670795.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.64626641258077 #Duplication Level Percentage of deduplicated Percentage of total 1 73.82622667742763 27.792817977340185 2 8.873220027176261 6.680872101610494 3 3.45918591479327 3.9067630355686314 4 2.107806172703053 3.174041308946455 5 1.6070800113534134 3.0250281126871963 6 1.3118195535148485 2.9631065038111646 7 1.0326347472947497 2.7212389962482315 8 0.9562920441618772 2.8800660050199585 9 0.8157348220584292 2.763843338990772 >10 5.917513462437693 35.59669422660573 >50 0.06165771152381394 1.559563421038489 >100 0.02362211010054472 1.6099059449192432 >500 0.0028026232322680175 0.740366819721311 >1k 0.004003747474668596 2.9895023416841373 >5k 0.0 0.0 >10k+ 4.003747474668597E-4 1.596189865807957 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10590 1.5787237531585656 No Hit GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC 3375 0.5031343405958602 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTT 2861 0.4265088439836313 No Hit CGTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC 2198 0.3276708979643557 No Hit CGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTG 1941 0.28935814965824136 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC 1912 0.2850349212501584 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG 1861 0.2774320023255987 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT 1745 0.26013908869326696 No Hit GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 1533 0.228534798261764 No Hit CGTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT 1251 0.18649512891419884 No Hit CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 1157 0.17248190579834374 No Hit CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT 881 0.13133669750072674 No Hit GAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT 874 0.13029315960912052 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCC 772 0.1150873217600012 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC 748 0.11150947756020842 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4907684165803262E-4 0.0 0.0 0.13819423221699625 0.0 2 1.4907684165803262E-4 0.0 0.0 0.6426702643877786 0.0 3 1.4907684165803262E-4 0.0 0.0 1.1241884629432242 0.0 4 1.4907684165803262E-4 0.0 0.0 1.7613428841896555 0.0 5 1.4907684165803262E-4 0.0 0.0 3.4915287084727824 0.0 6 1.4907684165803262E-4 0.0 0.0 5.022696949142436 0.0 7 1.4907684165803262E-4 0.0 0.0 6.089341751205659 0.0 8 1.4907684165803262E-4 0.0 0.0 7.354855060040698 0.0 9 1.4907684165803262E-4 0.0 0.0 7.965026572947026 0.0 10 1.4907684165803262E-4 0.0 0.0 9.153467154644861 0.0 11 1.4907684165803262E-4 0.0 0.0 10.245156866106635 0.0 12 1.4907684165803262E-4 0.0 0.0 11.39275039319017 0.0 13 1.4907684165803262E-4 0.0 0.0 11.862044290729656 0.0 14 1.4907684165803262E-4 0.0 0.0 12.113238768923441 0.0 15 1.4907684165803262E-4 0.0 0.0 12.429728903763445 0.0 16 1.4907684165803262E-4 0.0 0.0 12.926154786484693 0.0 17 1.4907684165803262E-4 0.0 0.0 13.517691694183767 0.0 18 1.4907684165803262E-4 0.0 0.0 14.190177326903152 0.0 19 1.4907684165803262E-4 0.0 0.0 14.650377537101498 0.0 20 1.4907684165803262E-4 0.0 0.0 15.08448930000969 0.0 21 1.4907684165803262E-4 0.0 0.0 15.592245022696948 0.0 22 1.4907684165803262E-4 0.0 0.0 16.145767335773225 0.0 23 1.4907684165803262E-4 0.0 0.0 16.69153765308328 0.0 24 1.4907684165803262E-4 0.0 0.0 17.137724640165775 0.0 25 1.4907684165803262E-4 0.0 0.0 17.52368458321842 0.0 26 1.4907684165803262E-4 0.0 0.0 17.898314686305056 0.0 27 1.4907684165803262E-4 0.0 0.0 18.273541096758326 0.0 28 2.9815368331606525E-4 0.0 0.0 18.671427187143614 0.0 29 2.9815368331606525E-4 0.0 0.0 19.075276351195225 0.0 30 2.9815368331606525E-4 0.0 0.0 19.587951609657196 0.0 31 2.9815368331606525E-4 0.0 0.0 20.015653068374093 0.0 32 2.9815368331606525E-4 0.0 0.0 20.450957446015547 0.0 33 2.9815368331606525E-4 0.0 0.0 20.86002429952519 0.0 34 2.9815368331606525E-4 0.0 0.0 21.275799610909445 0.0 35 2.9815368331606525E-4 0.0 0.0 21.709911373817633 0.0 36 2.9815368331606525E-4 0.0 0.0 22.138507293584478 0.0 37 4.472305249740979E-4 0.0 0.0 22.553835374443757 0.0 38 4.472305249740979E-4 0.0 0.0 23.01955142778345 0.0 39 4.472305249740979E-4 0.0 0.0 23.47199964221558 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGTACG 30 2.1641445E-6 45.000004 1 CTATGCG 20 7.031183E-4 45.0 1 TCGTTGA 25 3.8890634E-5 45.0 24 TCTTGCG 20 7.031183E-4 45.0 1 ACTACCG 20 7.031183E-4 45.0 1 TATTACG 25 3.8890634E-5 45.0 1 TTAACGG 35 1.2109194E-7 45.0 2 GGACCGT 20 7.031183E-4 45.0 8 AATAGCG 50 2.1827873E-11 45.0 1 CGTTTTT 5370 0.0 43.868713 1 CGTTTTC 195 0.0 43.846153 1 TACGAAT 80 0.0 42.1875 12 CGAGACA 65 0.0 41.53846 22 ACGATAG 50 1.0804797E-9 40.5 1 CGAATAT 90 0.0 40.0 14 CGGTCTA 90 0.0 40.0 31 CTACGAA 85 0.0 39.705883 11 CGTTTCT 320 0.0 38.671875 1 ATTACGG 70 0.0 38.571426 2 TGTAACG 35 6.2443996E-6 38.571426 1 >>END_MODULE