SRR3550762_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550762_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	441617
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC	3960	0.896704610556206	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC	3869	0.876098519758071	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG	3451	0.7814463664215825	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	1777	0.4023848719591864	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1508	0.3414723617976663	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	779	0.17639719485436475	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT	745	0.16869821587484177	No Hit
GAACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCT	702	0.15896127187132741	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGGATCAT	701	0.15873483131310617	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	681	0.15420602014868087	No Hit
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT	548	0.12408942590525275	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTC	539	0.12205146088126136	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTA	492	0.11140875464486195	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	482	0.1091443490626493	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTTGCG	20	7.028562E-4	45.000004	1
TCTACGA	20	7.028562E-4	45.000004	25
ACGGCCT	20	7.028562E-4	45.000004	8
GGACGCA	20	7.028562E-4	45.000004	9
CGATCTA	20	7.028562E-4	45.000004	43
GCATACG	20	7.028562E-4	45.000004	1
GTGCAAG	50	2.1827873E-11	45.0	1
TTGTGCG	55	1.8189894E-12	45.0	1
CTAACGG	25	3.886891E-5	45.0	2
AGGTTAC	25	3.886891E-5	45.0	6
GCTACGA	90	0.0	45.0	10
CACCGAA	25	3.886891E-5	45.0	16
TACGTAG	25	3.886891E-5	45.0	1
CGATGAA	505	0.0	42.772278	19
GTGCTAG	75	0.0	42.0	1
GGCCGAT	65	0.0	41.53846	8
CCGATGA	525	0.0	41.14286	18
CGCATGG	55	6.002665E-11	40.909092	2
GGCGATA	85	0.0	39.705883	8
ACCACCG	755	0.0	39.63576	14