Basic Statistics
Measure | Value |
---|---|
Filename | SRR3550761_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 341751 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC | 960 | 0.2809062738660604 | No Hit |
CCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC | 741 | 0.21682453014036535 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 711 | 0.20804620908205096 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 704 | 0.20599793416844428 | No Hit |
CTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGCT | 545 | 0.15947283255937802 | No Hit |
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC | 471 | 0.13781964061553587 | No Hit |
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 396 | 0.1158738379697499 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCCGT | 20 | 7.0263236E-4 | 45.0 | 39 |
GTTTGCG | 20 | 7.0263236E-4 | 45.0 | 1 |
TCGTTCA | 25 | 3.885034E-5 | 45.0 | 16 |
CGCGCAT | 20 | 7.0263236E-4 | 45.0 | 36 |
ATGAGCG | 20 | 7.0263236E-4 | 45.0 | 1 |
CGAATGG | 50 | 2.1827873E-11 | 45.0 | 2 |
ACCGTTT | 20 | 7.0263236E-4 | 45.0 | 15 |
TAGGCGG | 25 | 3.885034E-5 | 45.0 | 2 |
TCATACG | 20 | 7.0263236E-4 | 45.0 | 31 |
AGTAGCG | 20 | 7.0263236E-4 | 45.0 | 1 |
CCCGATC | 25 | 3.885034E-5 | 45.0 | 41 |
CCATTGA | 20 | 7.0263236E-4 | 45.0 | 23 |
GTATACG | 30 | 2.1610103E-6 | 44.999996 | 1 |
AACGGGA | 55 | 6.002665E-11 | 40.909092 | 4 |
GCTACGA | 105 | 0.0 | 40.714287 | 10 |
CTCGTGT | 50 | 1.0768417E-9 | 40.5 | 16 |
ACGGGCT | 50 | 1.0768417E-9 | 40.5 | 5 |
TATACGG | 50 | 1.0768417E-9 | 40.5 | 2 |
ACAACGG | 45 | 1.9215804E-8 | 40.0 | 2 |
TGCATAG | 45 | 1.9215804E-8 | 40.0 | 1 |