SRR3550760_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550760_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	626465
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10222	1.6316953062022619	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC	3499	0.5585308037959024	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTT	2483	0.3963509533653117	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC	1890	0.3016928320017878	No Hit
CGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTG	1875	0.29929844444621806	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG	1793	0.28620912580910346	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC	1741	0.2779085822831283	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1551	0.24757967324591157	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCT	1474	0.2352884837939869	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1185	0.18915661689000982	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT	1172	0.18708148100851604	No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT	1035	0.16521274133431238	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTT	909	0.14509988586752653	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	871	0.13903410406008318	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCC	699	0.1115784600895501	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTC	671	0.10710893665248657	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	50	2.1827873E-11	45.0	28
ACGTTAG	35	1.2107375E-7	45.0	1
CGTTACG	25	3.8887672E-5	45.0	44
GCGATCG	20	7.030827E-4	45.0	9
GATCGAG	30	2.1639153E-6	44.999996	1
CGTTTTT	5275	0.0	43.63507	1
GCCCTAC	70	0.0	41.785713	26
GCTAGCG	60	3.6379788E-12	41.249996	1
CGTAAGG	60	3.6379788E-12	41.249996	2
CGTTAGG	115	0.0	41.08696	2
CACGACG	55	6.002665E-11	40.909092	26
GCGCTAG	50	1.0804797E-9	40.5	1
CTAGACG	45	1.925946E-8	40.000004	1
CGTTCTG	260	0.0	39.807693	1
TATTGCG	40	3.4548611E-7	39.375	1
GCTACGA	80	0.0	39.375	10
GCGTAAG	40	3.4548611E-7	39.375	1
CGTTATT	70	0.0	38.571426	1
ACGCTAG	35	6.2437393E-6	38.571426	1
CCCGATC	35	6.2437393E-6	38.571426	41