SRR3550759_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550759_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	421243
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTC	2185	0.518702981414528	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC	1864	0.44249993471701604	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCG	1668	0.3959709716244543	No Hit
GCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	1500	0.35608900325940135	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1327	0.3150200715501504	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	789	0.1873028157144451	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT	635	0.15074434471314657	No Hit
CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT	577	0.1369755699204497	No Hit
GAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT	453	0.10753887898433921	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGA	20	7.0281903E-4	45.000004	24
CGACAGG	40	6.7975634E-9	45.000004	2
GCACACG	20	7.0281903E-4	45.000004	1
CGCACGA	20	7.0281903E-4	45.000004	40
CGATACT	20	7.0281903E-4	45.000004	10
GGTAGGC	20	7.0281903E-4	45.000004	8
TCGATCA	25	3.8865826E-5	45.0	17
CTCGATC	25	3.8865826E-5	45.0	16
GTAGTAG	50	2.1827873E-11	45.0	1
TCGCCTT	30	2.1622163E-6	44.999996	25
ATAGCGG	30	2.1622163E-6	44.999996	2
GCCGATG	30	2.1622163E-6	44.999996	9
CGAGACA	30	2.1622163E-6	44.999996	22
TAGACGG	45	1.9233994E-8	40.000004	2
TAAGGGA	295	0.0	39.66102	4
CATACGG	40	3.4512595E-7	39.375004	2
AGGGTAC	115	0.0	39.130432	6
TGCACGG	115	0.0	39.130432	2
GGCCGAT	75	0.0	39.0	8
CGGGATA	105	0.0	38.57143	6