SRR3550750_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550750_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410790
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC	3477	0.8464178777477543	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGC	2805	0.6828306433944351	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCG	2651	0.6453419021884661	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1986	0.4834587015263273	No Hit
GCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	1686	0.4104286861900241	TruSeq Adapter, Index 13 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCT	794	0.1932861072567492	No Hit
CCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	722	0.17575890357603643	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGCT	645	0.1570145329730519	Illumina Single End Adapter 2 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCT	571	0.13900046252343046	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTATACGCT	505	0.12293385914944376	No Hit
CGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTG	478	0.11636115776917647	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTATACGCTCGTA	466	0.11343995715572433	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTC	453	0.11027532315781786	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAGG	20	7.0279866E-4	45.000004	2
GCGAACC	20	7.0279866E-4	45.000004	33
GCGCGAC	65	0.0	45.000004	9
TAACGAT	20	7.0279866E-4	45.000004	15
TACGAGC	20	7.0279866E-4	45.000004	12
CGGGTAG	25	3.886414E-5	45.0	6
CGGTTTG	25	3.886414E-5	45.0	14
TGCGTAG	35	1.2093733E-7	45.0	1
GCGATGT	75	0.0	42.0	9
CGCGACC	70	0.0	41.785713	10
CGATGAA	310	0.0	41.370968	19
CGACCCG	60	3.6379788E-12	41.249996	32
CCGATGA	315	0.0	40.714287	18
CGTTTTT	1060	0.0	40.542454	1
TCGAGGG	95	0.0	40.26316	3
GTAATGA	45	1.9230356E-8	40.0	8
GACCGAT	125	0.0	39.6	9
CGGCGAA	40	3.4509867E-7	39.375004	31
CGTATGG	40	3.4509867E-7	39.375004	2
CGCTCGA	40	3.4509867E-7	39.375004	41