SRR3550749_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550749_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	384860
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1490	0.3871537702021514	No Hit
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	875	0.22735540196435067	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	600	0.15590084706126903	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGCT	485	0.12601985137452582	Illumina PCR Primer Index 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC	476	0.12368133866860677	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTC	20	7.027432E-4	45.0	24
ATCTCGA	20	7.027432E-4	45.0	28
CGCATCG	20	7.027432E-4	45.0	21
CACGACC	35	1.2091186E-7	45.0	27
TAACGCC	25	3.8859544E-5	45.0	12
CGCTATC	25	3.8859544E-5	45.0	39
AAACCGC	20	7.027432E-4	45.0	18
TTAACGG	20	7.027432E-4	45.0	2
ATAACGC	25	3.8859544E-5	45.0	11
AATAGGT	20	7.027432E-4	45.0	39
TCGACAG	20	7.027432E-4	45.0	1
ATTGACG	20	7.027432E-4	45.0	1
ATCGAAG	20	7.027432E-4	45.0	1
CTAGCGA	20	7.027432E-4	45.0	44
CAATCGG	30	2.1617252E-6	44.999996	22
ATACCGG	30	2.1617252E-6	44.999996	2
CGTTTTT	785	0.0	41.273884	1
ATGTAGG	95	0.0	40.263157	2
ATTAGCG	45	1.9224899E-8	40.000004	1
CGTTGAT	45	1.9224899E-8	40.000004	25