SRR3550747_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550747_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	323133
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC	2808	0.8689920249556684	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC	2646	0.8188578696697644	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG	2542	0.7866729798565916	No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1815	0.5616882212587386	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1008	0.3119458551122912	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	771	0.2386014427495799	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT	644	0.1992987407661861	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	643	0.19898927067182864	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCT	567	0.1754695435006638	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGGTACAT	536	0.16587597057558343	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTC	454	0.14049942283827402	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGGTACATCGTA	400	0.1237880377429727	No Hit
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	372	0.11512287510096463	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCTC	20	7.0257497E-4	45.000004	22
GGATACG	20	7.0257497E-4	45.000004	9
CTGCGAG	20	7.0257497E-4	45.000004	1
TCGCTAG	20	7.0257497E-4	45.000004	37
TTACGGG	60	0.0	45.000004	3
TAGTGCG	20	7.0257497E-4	45.000004	1
TCGACTT	20	7.0257497E-4	45.000004	36
TCGAATG	20	7.0257497E-4	45.000004	44
CGGGTAT	45	3.8380676E-10	45.0	6
TTGGACG	25	3.884561E-5	45.0	1
CGACAGG	25	3.884561E-5	45.0	2
TCGATGG	25	3.884561E-5	45.0	2
GCGTTAG	25	3.884561E-5	45.0	1
TCTACGG	35	1.2083001E-7	45.0	2
TCGCTCA	25	3.884561E-5	45.0	23
ACGTAGG	25	3.884561E-5	45.0	2
ATCGAAT	25	3.884561E-5	45.0	43
CGTTAGG	55	1.8189894E-12	44.999996	2
CGTTTTT	375	0.0	42.0	1
AACGTCT	70	0.0	41.785713	33