##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550747_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 323133 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.255801790593967 31.0 31.0 33.0 28.0 34.0 2 31.25778858859974 31.0 31.0 34.0 28.0 34.0 3 31.08422538088032 31.0 31.0 34.0 28.0 34.0 4 34.91194647405248 35.0 35.0 37.0 32.0 37.0 5 34.91561369467062 35.0 35.0 37.0 33.0 37.0 6 35.084052077627476 37.0 35.0 37.0 32.0 37.0 7 35.52576802740667 37.0 35.0 37.0 33.0 37.0 8 35.24380982443761 37.0 35.0 37.0 32.0 37.0 9 37.027935865417646 39.0 37.0 39.0 33.0 39.0 10 36.3160091974512 37.0 35.0 39.0 32.0 39.0 11 36.70252806120081 39.0 35.0 39.0 32.0 39.0 12 36.78109632875627 39.0 35.0 39.0 33.0 39.0 13 36.79429522828062 39.0 35.0 39.0 33.0 39.0 14 37.82885375371751 40.0 37.0 41.0 33.0 41.0 15 37.988868360705965 40.0 37.0 41.0 33.0 41.0 16 37.97265831716352 39.0 37.0 41.0 33.0 41.0 17 37.86132335601749 39.0 37.0 41.0 33.0 41.0 18 37.88757879882277 39.0 37.0 41.0 33.0 41.0 19 37.7908353526257 39.0 37.0 41.0 33.0 41.0 20 37.82850714721183 39.0 36.0 41.0 33.0 41.0 21 37.83429733267726 39.0 36.0 41.0 33.0 41.0 22 37.94444083396001 40.0 37.0 41.0 33.0 41.0 23 37.97298016606165 40.0 37.0 41.0 34.0 41.0 24 37.951057304577375 40.0 36.0 41.0 34.0 41.0 25 37.63921666929716 39.0 36.0 41.0 33.0 41.0 26 37.69596110579854 39.0 36.0 41.0 33.0 41.0 27 37.73615198695274 40.0 36.0 41.0 33.0 41.0 28 37.6546808899122 40.0 36.0 41.0 33.0 41.0 29 37.64984696703834 40.0 36.0 41.0 33.0 41.0 30 37.363611887365266 39.0 36.0 41.0 33.0 41.0 31 37.38322919664658 39.0 36.0 41.0 33.0 41.0 32 37.3600777388877 39.0 36.0 41.0 33.0 41.0 33 37.307829902857335 40.0 35.0 41.0 33.0 41.0 34 37.22577700203941 40.0 35.0 41.0 32.0 41.0 35 37.27627323733571 40.0 36.0 41.0 33.0 41.0 36 37.14259453537707 40.0 35.0 41.0 32.0 41.0 37 37.181532062649126 40.0 35.0 41.0 33.0 41.0 38 36.99331235126093 39.0 35.0 41.0 32.0 41.0 39 36.92937273506575 39.0 35.0 41.0 32.0 41.0 40 36.82674316767399 39.0 35.0 41.0 31.0 41.0 41 36.707281521850135 39.0 35.0 41.0 31.0 41.0 42 36.80996369915793 39.0 35.0 41.0 31.0 41.0 43 36.788944490349174 39.0 35.0 41.0 31.0 41.0 44 36.82215372617467 39.0 35.0 41.0 32.0 41.0 45 36.80790572303046 39.0 35.0 41.0 32.0 41.0 46 36.691201455747326 39.0 35.0 41.0 31.0 41.0 47 36.63053293844949 39.0 35.0 41.0 31.0 41.0 48 36.581961607140094 39.0 35.0 40.0 31.0 41.0 49 36.60789829574819 39.0 35.0 41.0 31.0 41.0 50 36.495600882608706 39.0 35.0 40.0 31.0 41.0 51 35.268907849090006 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 16.0 9 16.0 10 14.0 11 17.0 12 8.0 13 10.0 14 10.0 15 16.0 16 29.0 17 37.0 18 71.0 19 158.0 20 335.0 21 614.0 22 967.0 23 1171.0 24 1537.0 25 1919.0 26 2304.0 27 2566.0 28 3024.0 29 3597.0 30 4566.0 31 6217.0 32 8410.0 33 12531.0 34 22664.0 35 24914.0 36 26792.0 37 41020.0 38 73678.0 39 83895.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.39245450015938 20.654343567509354 23.133817963501098 10.819383968830172 2 33.3132177772001 25.87727034997973 23.20561502539202 17.60389684742815 3 32.33869645006855 25.72655841402766 25.419873550519444 16.51487158538435 4 28.2475018026633 24.391813897064058 28.27813934200469 19.08254495826796 5 26.6880819971962 28.89769847090826 24.547167884431488 19.86705164746405 6 23.11308346717915 36.79599421909864 25.224597920979907 14.866324392742309 7 76.87175249819734 5.8171093636366455 12.385302646278777 4.925835491887241 8 76.28716348995614 7.829283917148667 9.8086546406588 6.074897952236386 9 70.5471121798145 6.918822899549102 11.91243234210062 10.621632578535774 10 40.0321229957943 21.518384070955303 21.956903194659784 16.49258973859061 11 31.787839682112317 23.691792543627546 23.5002305552203 21.02013721903984 12 26.702627091630998 20.360965918058508 30.001578297481224 22.934828692829267 13 25.498169484391873 22.158058755992116 32.75060114565829 19.59317061395772 14 21.649599390962855 27.301451724212633 29.374282416218712 21.674666468605803 15 19.585433861598784 23.76389907561283 35.46774857411654 21.18291848867185 16 21.665691835869442 23.489399101917783 30.72264361733404 24.122265444878735 17 21.354055450851504 24.952264237945364 29.014059226386657 24.679621084816468 18 21.910173210411813 24.313208493097267 30.885734357060407 22.890883939430513 19 22.881909306694148 26.509517752751965 27.826313004242838 22.782259936311057 20 24.16373443752263 26.079044851500775 29.167865863282298 20.589354847694295 21 22.727174259515433 28.34622276276332 29.18148254743403 19.74512043028722 22 21.685807392002673 24.1646628478057 29.19633711196318 24.953192648228438 23 21.44875329972488 26.468358230202426 29.046244116199833 23.036644353872862 24 22.53715962157997 24.75203708689611 28.824044588451198 23.886758703072726 25 21.132165393197226 27.346324887894458 26.974651304571186 24.54685841433713 26 19.048193777794285 25.35426589051567 30.712431104220244 24.885109227469805 27 21.959997895603358 25.58389270052888 29.123921109883543 23.33218829398421 28 19.726242754531416 25.383975019573985 31.114742226884907 23.775039999009696 29 22.0054899994739 23.395320193233125 31.35891413133292 23.240275675960053 30 21.932455057205548 25.516118749864606 31.52664692247465 21.0247792704552 31 25.124639080502455 25.18405733861908 26.375207731800838 23.316095849077627 32 25.591319982793465 24.882633466714942 27.53726793611299 21.9887786143786 33 23.324451541625272 24.477537113201066 28.5535677259828 23.64444361919086 34 22.289274075999664 25.067696583140687 29.758025333221923 22.885004007637722 35 21.771530608139685 23.835696137503753 29.088332049032438 25.304441205324125 36 22.790925098953064 26.4903306069018 29.77195148746801 20.946792806677127 37 22.711081814608843 26.66765697096861 29.61628803000622 21.004973184416322 38 23.768231656933832 26.32785880736415 26.096994116973505 23.80691541872851 39 24.01302250157056 26.392847527179207 27.493323182714242 22.10080678853599 40 21.89872281692059 23.537676436637543 30.65486966666976 23.908731079772107 41 19.82094060340479 27.24605657732265 27.095035171276223 25.837967647996336 42 21.07862706687339 24.51560193480703 29.46928973518644 24.936481263133135 43 23.06573454274246 24.445352223387893 28.318370454271154 24.170542779598495 44 22.37902040336332 22.84074978414461 29.877480789643897 24.902749022848177 45 22.11999393438615 22.777308414801336 28.301349599081494 26.801348051731022 46 24.275143671491307 24.83837924322183 28.482080134186234 22.40439695110063 47 19.984340813225515 24.730374180291086 31.937932677875676 23.347352328607727 48 21.1018373239502 24.30454333045526 29.386351749898648 25.207267595695892 49 22.019416153719984 22.34033664156864 32.399662058656965 23.24058514605441 50 22.34033664156864 21.648361510585424 30.858500988756955 25.15280085908898 51 20.560264658824696 22.5238524075226 28.291446556062056 28.62443637759065 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 110.0 1 276.5 2 443.0 3 931.5 4 1420.0 5 970.5 6 521.0 7 488.5 8 456.0 9 477.0 10 498.0 11 520.5 12 543.0 13 523.5 14 504.0 15 483.5 16 463.0 17 501.5 18 540.0 19 554.5 20 569.0 21 656.0 22 743.0 23 803.5 24 864.0 25 1151.0 26 1671.5 27 1905.0 28 2320.5 29 2736.0 30 3134.0 31 3532.0 32 4386.5 33 5241.0 34 6212.0 35 7183.0 36 7959.5 37 8736.0 38 9780.5 39 10825.0 40 12419.5 41 14014.0 42 16897.5 43 19781.0 44 28365.0 45 36949.0 46 36051.5 47 35154.0 48 35233.5 49 35313.0 50 30996.5 51 26680.0 52 23580.0 53 20480.0 54 18766.0 55 17052.0 56 16242.0 57 15432.0 58 13893.5 59 12355.0 60 11967.5 61 11580.0 62 10337.0 63 9094.0 64 7939.0 65 6784.0 66 5689.5 67 4595.0 68 4005.0 69 3415.0 70 2757.5 71 2100.0 72 1777.5 73 1455.0 74 1130.5 75 623.0 76 440.0 77 311.5 78 183.0 79 148.5 80 114.0 81 75.0 82 36.0 83 35.5 84 35.0 85 22.5 86 10.0 87 6.0 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 323133.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.332790210009485 #Duplication Level Percentage of deduplicated Percentage of total 1 73.14402161883518 28.038144358312074 2 10.293801394063538 7.891802586042814 3 3.898383753740798 4.483077797707658 4 2.11397449367937 3.241381631020892 5 1.33897369935933 2.5663298957130753 6 1.0897631911669048 2.5064198271354856 7 0.8672779650001263 2.327162900027965 8 0.7565076814728148 2.319924019692647 9 0.7354845678190267 2.537385807681562 >10 5.6753319386745265 36.58715856537286 >50 0.05415083780019132 1.4263829036177458 >100 0.024246643791130444 1.7436322722764277 >500 0.004041107298521741 0.9793215374317321 >1k 0.004041107298521741 3.35187589796707 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 2808 0.8689920249556684 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC 2646 0.8188578696697644 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG 2542 0.7866729798565916 No Hit GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 1815 0.5616882212587386 No Hit CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 1008 0.3119458551122912 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 771 0.2386014427495799 No Hit GAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT 644 0.1992987407661861 No Hit CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 643 0.19898927067182864 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCT 567 0.1754695435006638 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGGTACAT 536 0.16587597057558343 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTC 454 0.14049942283827402 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGGTACATCGTA 400 0.1237880377429727 No Hit TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 372 0.11512287510096463 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.0947009435743176E-4 0.0 0.0 0.2054881426533347 0.0 2 3.0947009435743176E-4 0.0 0.0 1.3214373029062336 0.0 3 3.0947009435743176E-4 0.0 0.0 1.733032528401618 0.0 4 3.0947009435743176E-4 0.0 0.0 2.4277928902340524 0.0 5 3.0947009435743176E-4 0.0 0.0 4.625340030266175 0.0 6 3.0947009435743176E-4 0.0 0.0 5.55622607409333 0.0 7 3.0947009435743176E-4 0.0 0.0 6.514345486223939 0.0 8 3.0947009435743176E-4 0.0 0.0 8.047460333670656 0.0 9 3.0947009435743176E-4 0.0 0.0 8.528067390207747 0.0 10 3.0947009435743176E-4 0.0 0.0 10.415525495693723 0.0 11 3.0947009435743176E-4 0.0 0.0 12.056954876165541 0.0 12 3.0947009435743176E-4 0.0 0.0 14.182086014118026 0.0 13 3.0947009435743176E-4 0.0 0.0 14.84435201604293 0.0 14 3.0947009435743176E-4 0.0 0.0 15.096879613038594 0.0 15 3.0947009435743176E-4 0.0 0.0 15.61771778184215 0.0 16 3.0947009435743176E-4 0.0 0.0 16.535606081706295 0.0 17 3.0947009435743176E-4 0.0 0.0 17.57604453893598 0.0 18 3.0947009435743176E-4 0.0 0.0 18.721083888058477 0.0 19 3.0947009435743176E-4 0.0 0.0 19.540560697916955 0.0 20 6.189401887148635E-4 0.0 0.0 20.184258494180416 0.0 21 6.189401887148635E-4 0.0 0.0 20.937508703846405 0.0 22 6.189401887148635E-4 0.0 0.0 21.803406027858497 0.0 23 6.189401887148635E-4 0.0 0.0 22.586055896488443 0.0 24 6.189401887148635E-4 0.0 0.0 23.272770035867584 0.0 25 6.189401887148635E-4 0.0 0.0 23.827030974861746 0.0 26 6.189401887148635E-4 0.0 0.0 24.37355516149697 0.0 27 6.189401887148635E-4 0.0 0.0 24.905534253697393 0.0 28 9.284102830722953E-4 0.0 0.0 25.488575911466796 0.0 29 9.284102830722953E-4 0.0 0.0 26.055834594423967 0.0 30 9.284102830722953E-4 0.0 0.0 26.687772527101842 0.0 31 9.284102830722953E-4 0.0 0.0 27.30485589525056 0.0 32 9.284102830722953E-4 0.0 0.0 27.828479294903335 0.0 33 9.284102830722953E-4 0.0 0.0 28.417710354559887 0.0 34 9.284102830722953E-4 0.0 0.0 28.99084896930985 0.0 35 9.284102830722953E-4 0.0 0.0 29.556560301795237 0.0 36 9.284102830722953E-4 0.0 0.0 30.103703428619177 0.0 37 9.284102830722953E-4 0.0 0.0 30.654250726481045 0.0 38 9.284102830722953E-4 0.0 0.0 31.196751801889626 0.0 39 0.001237880377429727 0.0 0.0 31.82157192239728 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCTC 20 7.0257497E-4 45.000004 22 GGATACG 20 7.0257497E-4 45.000004 9 CTGCGAG 20 7.0257497E-4 45.000004 1 TCGCTAG 20 7.0257497E-4 45.000004 37 TTACGGG 60 0.0 45.000004 3 TAGTGCG 20 7.0257497E-4 45.000004 1 TCGACTT 20 7.0257497E-4 45.000004 36 TCGAATG 20 7.0257497E-4 45.000004 44 CGGGTAT 45 3.8380676E-10 45.0 6 TTGGACG 25 3.884561E-5 45.0 1 CGACAGG 25 3.884561E-5 45.0 2 TCGATGG 25 3.884561E-5 45.0 2 GCGTTAG 25 3.884561E-5 45.0 1 TCTACGG 35 1.2083001E-7 45.0 2 TCGCTCA 25 3.884561E-5 45.0 23 ACGTAGG 25 3.884561E-5 45.0 2 ATCGAAT 25 3.884561E-5 45.0 43 CGTTAGG 55 1.8189894E-12 44.999996 2 CGTTTTT 375 0.0 42.0 1 AACGTCT 70 0.0 41.785713 33 >>END_MODULE