SRR3550746_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550746_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	465028
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6114	1.3147595413609503	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	1314	0.2825636305770835	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTT	1054	0.2266530187429574	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTG	934	0.20084812097336074	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	850	0.18278469253464308	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	790	0.16988224364984475	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGC	671	0.14429238669499472	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCG	649	0.13956148877056868	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	648	0.13934644795582202	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCT	631	0.13569075410512915	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	570	0.12257326440558419	No Hit
CGTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCT	527	0.1133265093714787	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGGAT	35	1.2098462E-7	45.0	5
TGCGACG	20	7.02895E-4	45.0	1
TATTACG	20	7.02895E-4	45.0	1
GGACGTA	20	7.02895E-4	45.0	8
CGTCGGT	20	7.02895E-4	45.0	26
AATAGCG	40	6.7993824E-9	45.0	10
CGTCATA	20	7.02895E-4	45.0	38
GCCGCAT	30	2.1627038E-6	44.999996	19
TACGCGG	30	2.1627038E-6	44.999996	2
CGTTTTT	2475	0.0	43.272728	1
CGTAAGG	70	0.0	41.785713	2
AGCGAAT	45	1.924127E-8	40.0	13
CTCGTAA	35	6.2402687E-6	38.571426	33
ATTGCGG	35	6.2402687E-6	38.571426	2
TACGGGT	65	9.094947E-12	38.07692	4
ACAACGG	30	1.138877E-4	37.499996	2
CGCGGGT	85	0.0	37.058823	4
GTTTTTT	3055	0.0	36.30933	2
TCGTTCA	50	4.8683432E-8	36.0	16
TCCATCG	25	0.0021058216	36.0	30