SRR3550743_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550743_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	431758
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC	12844	2.974814595213059	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	11706	2.7112410192746865	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG	10980	2.5430912687199774	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	3890	0.9009676717049828	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCATGCACT	2307	0.5343270999031865	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCT	2263	0.5241362059301738	No Hit
GAACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	2155	0.4991221934509609	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTA	1811	0.41944793148013476	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1755	0.40647770278720946	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTC	1724	0.39929775476076873	No Hit
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	814	0.1885315385007342	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTT	756	0.17509808735449026	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	733	0.16977102914132453	TruSeq Adapter, Index 16 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATG	534	0.1236803950361082	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCATGCACTCGT	459	0.1063095530366548	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTCATGCAC	459	0.1063095530366548	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	442	0.10237216218344534	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTCGG	25	3.8867467E-5	45.0	2
ATAGCTA	20	7.028388E-4	45.0	31
CCCGTAT	20	7.028388E-4	45.0	41
ACCTAGG	25	3.8867467E-5	45.0	2
TGCGATG	40	6.7975634E-9	45.0	1
ACGGAGA	20	7.028388E-4	45.0	30
TTGCGTG	25	3.8867467E-5	45.0	1
TTGCGCG	25	3.8867467E-5	45.0	14
GCTAGCG	50	2.1827873E-11	45.0	1
GTATACG	25	3.8867467E-5	45.0	1
CACCGAA	20	7.028388E-4	45.0	16
ATTTGCG	25	3.8867467E-5	45.0	12
TATCGGG	20	7.028388E-4	45.0	3
AATTACG	30	2.1623418E-6	44.999996	1
TCGAATG	230	0.0	44.02174	44
CGATGAA	1280	0.0	43.945312	19
CGAATGC	185	0.0	43.783783	45
GATGAAT	1335	0.0	43.31461	20
CTCGAAT	240	0.0	43.124996	43
CCGATGA	1290	0.0	43.081398	18