SRR3550737_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550737_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	310581
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	1290	0.4153505848715794	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC	1232	0.39667590741223707	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1140	0.3670540052353492	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG	1103	0.35514084892507913	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	1072	0.3451595558002582	No Hit
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	864	0.27818829870468575	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	500	0.16098859878743388	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	314	0.10110084003850847	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAAGG	20	7.0253265E-4	45.000004	2
CGACGGT	20	7.0253265E-4	45.000004	28
ACCGCGT	20	7.0253265E-4	45.000004	25
TTATGCG	20	7.0253265E-4	45.000004	1
CCGTCTA	20	7.0253265E-4	45.000004	32
CGAGCAC	20	7.0253265E-4	45.000004	34
ATAACGG	20	7.0253265E-4	45.000004	2
AGTACGG	30	2.1603682E-6	45.000004	2
AAGTACG	25	3.8842103E-5	45.0	1
CTATCAG	25	3.8842103E-5	45.0	20
ACGGGAT	55	6.002665E-11	40.909092	5
CGTTTTT	575	0.0	40.304348	1
TAGGGAC	130	0.0	39.80769	5
CGAATGG	35	6.233573E-6	38.57143	2
CGATGAA	210	0.0	38.57143	19
TTTAGGG	205	0.0	38.414635	3
CAACGGG	65	9.094947E-12	38.07692	3
TATGGGT	65	9.094947E-12	38.07692	4
AGTTAGG	65	9.094947E-12	38.07692	2
TCGAGGG	95	0.0	37.894737	3