##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550737_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 310581 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.279543822706476 31.0 31.0 33.0 28.0 34.0 2 31.26952067254597 31.0 31.0 34.0 28.0 34.0 3 31.07091869753784 31.0 31.0 34.0 27.0 34.0 4 34.92247111059595 35.0 35.0 37.0 32.0 37.0 5 34.93259729345968 35.0 35.0 37.0 33.0 37.0 6 35.10863510646176 37.0 35.0 37.0 33.0 37.0 7 35.55951265531375 37.0 35.0 37.0 33.0 37.0 8 35.25401103093879 37.0 35.0 37.0 32.0 37.0 9 37.11901565131157 39.0 37.0 39.0 33.0 39.0 10 36.41219198856337 38.0 35.0 39.0 32.0 39.0 11 36.745180806295295 39.0 37.0 39.0 33.0 39.0 12 36.8703526616245 39.0 37.0 39.0 33.0 39.0 13 36.927110802013004 39.0 37.0 39.0 33.0 39.0 14 37.984554753832334 40.0 37.0 41.0 33.0 41.0 15 38.18260292806063 40.0 37.0 41.0 33.0 41.0 16 38.1331118130214 40.0 37.0 41.0 34.0 41.0 17 38.044407095089525 40.0 37.0 41.0 33.0 41.0 18 38.0311867113571 39.0 37.0 41.0 34.0 41.0 19 37.91878125191174 39.0 37.0 41.0 34.0 41.0 20 38.001564809180216 40.0 37.0 41.0 34.0 41.0 21 37.98091963127171 40.0 37.0 41.0 34.0 41.0 22 38.08510501286299 40.0 37.0 41.0 34.0 41.0 23 38.12394834197842 40.0 37.0 41.0 34.0 41.0 24 38.09973565672079 40.0 37.0 41.0 34.0 41.0 25 37.72378220174447 40.0 36.0 41.0 33.0 41.0 26 37.79683882787421 40.0 36.0 41.0 33.0 41.0 27 37.85828817603137 40.0 36.0 41.0 33.0 41.0 28 37.77464815941735 40.0 36.0 41.0 33.0 41.0 29 37.74898335699866 40.0 36.0 41.0 33.0 41.0 30 37.513312147233734 40.0 36.0 41.0 33.0 41.0 31 37.50843741246245 39.0 36.0 41.0 33.0 41.0 32 37.48817538741906 40.0 36.0 41.0 33.0 41.0 33 37.519239747441084 40.0 36.0 41.0 33.0 41.0 34 37.43598932323613 40.0 36.0 41.0 33.0 41.0 35 37.43660107991152 40.0 36.0 41.0 33.0 41.0 36 37.314594260434475 40.0 36.0 41.0 33.0 41.0 37 37.3057753049929 40.0 36.0 41.0 33.0 41.0 38 37.13504367620685 39.0 35.0 41.0 32.0 41.0 39 37.051548549331734 39.0 35.0 41.0 32.0 41.0 40 36.98667336379238 39.0 35.0 41.0 32.0 41.0 41 36.8387280612787 39.0 35.0 41.0 31.0 41.0 42 36.88204043389647 39.0 35.0 41.0 31.0 41.0 43 36.83790057988093 39.0 35.0 41.0 31.0 41.0 44 36.83018278645506 39.0 35.0 41.0 31.0 41.0 45 36.81566161484444 39.0 35.0 41.0 31.0 41.0 46 36.71064231231144 39.0 35.0 41.0 31.0 41.0 47 36.659480135616796 39.0 35.0 41.0 31.0 41.0 48 36.588719206905765 39.0 35.0 41.0 31.0 41.0 49 36.542892192374936 39.0 35.0 41.0 31.0 41.0 50 36.43372582353718 39.0 35.0 40.0 31.0 41.0 51 35.181733589627186 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 24.0 10 17.0 11 7.0 12 9.0 13 19.0 14 9.0 15 16.0 16 26.0 17 46.0 18 91.0 19 131.0 20 274.0 21 484.0 22 731.0 23 999.0 24 1239.0 25 1736.0 26 2130.0 27 2459.0 28 2957.0 29 3408.0 30 4457.0 31 5807.0 32 7928.0 33 11419.0 34 20217.0 35 22910.0 36 25854.0 37 40343.0 38 71889.0 39 82925.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.27212546807435 20.52218261902692 23.88748828807944 12.31820362481929 2 33.732907035523745 24.798361780018737 24.335680547103657 17.133050637353865 3 33.38291782175986 24.53981409036612 25.77974827822694 16.29751980964708 4 29.563624304126783 24.859537447557965 25.71986051947801 19.856977728837244 5 25.56820925942025 29.879483934947725 24.47509667365357 20.077210131978454 6 24.401685872606503 36.104269095662644 24.491517510729892 15.002527521000964 7 78.35540487022709 6.219955502751295 10.584356415878627 4.840283211142986 8 78.49288913359156 7.012341385983046 8.89783985498147 5.596929625443926 9 72.16539324685026 7.635367263290414 12.069637228291493 8.129602261567834 10 39.17142387976084 23.54039686909373 20.732755706240884 16.55542354490455 11 30.843483664486882 25.925603948728348 23.39679503897534 19.83411734780943 12 27.23315334807989 22.0918214572044 29.2149229991532 21.46010219556251 13 25.446179901539374 22.96019395906382 31.11652032803037 20.47710581136644 14 20.858648790492655 27.930555958027053 29.156967103589725 22.053828147890567 15 20.12582868881226 25.194071755838248 34.32824287383968 20.351856681509815 16 21.902176887832802 24.87177258106581 31.474880948931194 21.751169582170192 17 21.88607802795406 24.75875858471703 29.127345201412837 24.22781818591607 18 22.295633023269293 25.354416400230534 29.912325609100364 22.43762496739981 19 23.893283877635785 27.653333590915093 26.93886618949646 21.514516341952664 20 25.774274665868163 26.456222370331734 27.872600062463576 19.896902901336528 21 23.78638744804093 27.48526149378101 28.56871476362044 20.15963629455762 22 21.596620527334252 25.26683860249017 28.223555207820183 24.912985662355393 23 22.25892762274576 26.712838196798906 28.744514313496317 22.28371986695902 24 22.856839278642287 25.21242445610002 28.68108480557407 23.249651459683626 25 21.822648520031812 27.12013935173111 27.399937536423668 23.657274591813408 26 20.95942765333359 26.85901584449789 29.13958033492068 23.041976167247835 27 23.477289338369054 26.97879136199574 27.980140446453582 21.563778853181617 28 20.76881715236927 26.517398037870958 30.111629494399207 22.602155315360566 29 22.03611940202395 25.511863249844644 30.294190565424156 22.15782678270725 30 24.638339112824028 24.93648999777836 28.674967238820148 21.750203650577465 31 24.72366307018137 25.41655799936248 26.556035301579943 23.3037436288762 32 24.817036457478082 25.945888512175568 27.976920674477835 21.26015435586852 33 26.297487611927323 24.33342670672063 26.93886618949646 22.43021949185559 34 24.542067930749145 24.274182902366853 28.61701134325667 22.56673782362733 35 24.107398714023073 23.096068336440414 28.582237805918588 24.214295143617928 36 25.240114495091458 24.966111899955244 28.172038856208204 21.621734748745094 37 24.70080268915355 25.295494573074333 29.200112048064756 20.803590689707356 38 24.278046628737755 25.171855329205584 26.931460713952237 23.618637328104423 39 25.05111388011501 23.054533277953254 29.236817448588294 22.657535393343444 40 24.755860789938858 22.470144664354873 30.18536227264385 22.588632273062423 41 21.97590966607745 24.240375296621494 29.037191586091872 24.746523451209185 42 22.470144664354873 24.40361773579195 29.660539440596818 23.465698159256362 43 23.528161735585886 23.803130262314824 29.747473283942032 22.92123471815726 44 23.81214562384692 23.97023642785618 28.82468663569246 23.392931312604443 45 23.879438858140066 22.455333713266427 28.257684790763115 25.40754263783039 46 25.069144603179204 23.95896722594106 28.286662738544855 22.68522543233488 47 22.80757676741333 24.02529452864148 30.847025413660205 22.320103290284983 48 22.72064292406812 23.057109095533853 29.781602866884967 24.44064511351306 49 22.740283533120184 22.28629568453962 31.738580273745015 23.23484050859518 50 22.03611940202395 22.198073932404107 30.390461747499042 25.3753449180729 51 21.795280458237947 22.80145920065941 28.139197182055565 27.264063159047076 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 124.0 1 352.5 2 581.0 3 1221.5 4 1862.0 5 1219.0 6 576.0 7 583.0 8 590.0 9 579.5 10 569.0 11 576.5 12 584.0 13 587.0 14 590.0 15 573.5 16 557.0 17 577.5 18 598.0 19 659.5 20 721.0 21 941.5 22 1162.0 23 1159.5 24 1157.0 25 1384.5 26 2129.0 27 2646.0 28 3007.5 29 3369.0 30 4101.5 31 4834.0 32 5435.5 33 6037.0 34 6636.5 35 7236.0 36 8238.5 37 9241.0 38 10099.0 39 10957.0 40 12335.0 41 13713.0 42 14758.0 43 15803.0 44 16721.5 45 17640.0 46 19056.0 47 20472.0 48 25268.0 49 30064.0 50 30317.0 51 30570.0 52 30636.0 53 30702.0 54 26062.5 55 21423.0 56 19049.0 57 16675.0 58 15855.0 59 15035.0 60 14035.5 61 13036.0 62 11592.0 63 10148.0 64 8507.5 65 6867.0 66 5531.0 67 4195.0 68 3627.0 69 3059.0 70 2631.5 71 2204.0 72 1840.0 73 1476.0 74 1197.0 75 663.5 76 409.0 77 367.5 78 326.0 79 249.0 80 172.0 81 103.0 82 34.0 83 27.5 84 21.0 85 15.0 86 9.0 87 6.0 88 3.0 89 2.0 90 1.0 91 0.5 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 310581.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.38037276474826 #Duplication Level Percentage of deduplicated Percentage of total 1 73.11845625858803 28.794320634461368 2 9.723538451991498 7.658331376635768 3 3.622789795324598 4.280004377646261 4 2.1872050320363186 3.445317978980935 5 1.5224279902094011 2.997689088096636 6 1.1638415313029165 2.7499508005082567 7 1.0802021932727413 2.9777135522665437 8 0.9394157995750049 2.9595635494686183 9 0.8109348971547437 2.8741426684106934 >10 5.740357035872318 35.73736960563167 >50 0.05891741492265131 1.5960972071018404 >100 0.027003815172881848 1.7701114392510418 >500 8.182974294812682E-4 0.278422771438722 >1k 0.004091487147406341 1.8809649501016439 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC 1290 0.4153505848715794 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC 1232 0.39667590741223707 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1140 0.3670540052353492 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG 1103 0.35514084892507913 No Hit GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC 1072 0.3451595558002582 No Hit CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC 864 0.27818829870468575 No Hit CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT 500 0.16098859878743388 No Hit CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG 314 0.10110084003850847 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16710616554135635 0.0 2 0.0 0.0 0.0 0.9752689314542744 0.0 3 0.0 0.0 0.0 1.31431092050061 0.0 4 0.0 0.0 0.0 1.8172393031125536 0.0 5 0.0 0.0 0.0 3.3846243009070096 0.0 6 0.0 0.0 0.0 4.188601363251455 0.0 7 0.0 0.0 0.0 5.017048692611589 0.0 8 0.0 0.0 0.0 6.310431095269833 0.0 9 0.0 0.0 0.0 6.74349042600803 0.0 10 0.0 0.0 0.0 8.140227509087806 0.0 11 0.0 0.0 0.0 9.639031363798816 0.0 12 0.0 0.0 0.0 11.169067006674588 0.0 13 0.0 0.0 0.0 11.70032938267312 0.0 14 0.0 0.0 0.0 11.918307945431305 0.0 15 0.0 0.0 0.0 12.3539430937501 0.0 16 0.0 0.0 0.0 13.179814605529636 0.0 17 0.0 0.0 0.0 14.099381481803459 0.0 18 0.0 0.0 0.0 15.08173391160438 0.0 19 0.0 0.0 0.0 15.73985530344741 0.0 20 0.0 0.0 0.0 16.35032407004936 0.0 21 0.0 0.0 0.0 17.086685920903083 0.0 22 0.0 0.0 0.0 17.87842784973968 0.0 23 0.0 0.0 0.0 18.643445671177567 0.0 24 0.0 0.0 0.0 19.23427382872745 0.0 25 0.0 0.0 0.0 19.770365862689605 0.0 26 0.0 0.0 0.0 20.264278883769453 0.0 27 0.0 0.0 0.0 20.78877973861891 0.0 28 0.0 0.0 0.0 21.30716302671445 0.0 29 0.0 0.0 0.0 21.829732018378458 0.0 30 0.0 0.0 0.0 22.411222837198668 0.0 31 0.0 0.0 0.0 22.941197304406902 0.0 32 0.0 0.0 0.0 23.504335422965344 0.0 33 0.0 0.0 0.0 24.025938483036633 0.0 34 0.0 0.0 0.0 24.548185497503066 0.0 35 0.0 0.0 0.0 25.072686352352527 0.0 36 0.0 0.0 0.0 25.620047588229802 0.0 37 0.0 0.0 0.0 26.160647302958004 0.0 38 0.0 0.0 0.0 26.691909678956538 0.0 39 0.0 0.0 0.0 27.23798300604351 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAAAGG 20 7.0253265E-4 45.000004 2 CGACGGT 20 7.0253265E-4 45.000004 28 ACCGCGT 20 7.0253265E-4 45.000004 25 TTATGCG 20 7.0253265E-4 45.000004 1 CCGTCTA 20 7.0253265E-4 45.000004 32 CGAGCAC 20 7.0253265E-4 45.000004 34 ATAACGG 20 7.0253265E-4 45.000004 2 AGTACGG 30 2.1603682E-6 45.000004 2 AAGTACG 25 3.8842103E-5 45.0 1 CTATCAG 25 3.8842103E-5 45.0 20 ACGGGAT 55 6.002665E-11 40.909092 5 CGTTTTT 575 0.0 40.304348 1 TAGGGAC 130 0.0 39.80769 5 CGAATGG 35 6.233573E-6 38.57143 2 CGATGAA 210 0.0 38.57143 19 TTTAGGG 205 0.0 38.414635 3 CAACGGG 65 9.094947E-12 38.07692 3 TATGGGT 65 9.094947E-12 38.07692 4 AGTTAGG 65 9.094947E-12 38.07692 2 TCGAGGG 95 0.0 37.894737 3 >>END_MODULE