SRR3550736_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550736_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	538999
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12040	2.2337703780526494	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	2705	0.5018562186571774	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT	2523	0.46808992224475365	No Hit
CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	1947	0.36122515997246746	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	1886	0.3499078848012705	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT	1553	0.28812669411260505	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC	1421	0.26363685275853943	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG	1295	0.24026018601147683	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1153	0.21391505364573962	No Hit
CGTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	1144	0.21224529173523513	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	799	0.14823775183256369	No Hit
GAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	772	0.14322846610105028	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC	713	0.13228224913218764	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	710	0.13172566182868614	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCC	602	0.11168851890263247	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	25	3.888039E-5	45.0	28
TAGCGCC	20	7.029949E-4	45.0	20
TCGTCCC	25	3.888039E-5	45.0	38
AATCGCG	20	7.029949E-4	45.0	1
TGCGTAG	20	7.029949E-4	45.0	1
CGTTTTT	5445	0.0	43.512394	1
TACGGGT	60	3.6379788E-12	41.250004	4
GCTAGCG	50	1.0786607E-9	40.5	1
CGTTTCT	300	0.0	39.75	1
ACACGAC	80	0.0	39.375	26
GCTACGA	40	3.4536606E-7	39.375	10
ACGGGTG	70	0.0	38.571426	5
TACGCGG	35	6.242117E-6	38.571426	2
GTTTTTT	6345	0.0	38.014183	2
CGTTCTG	250	0.0	37.8	1
CTCGTCC	30	1.1391174E-4	37.500004	37
ACCATAG	30	1.1391174E-4	37.500004	21
CCCGTCG	30	1.1391174E-4	37.500004	40
GGACGCA	30	1.1391174E-4	37.500004	8
CGGTCTA	30	1.1391174E-4	37.500004	31