SRR3550735_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550735_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	414091
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC	4003	0.9666957263017066	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	3729	0.9005266958228989	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG	3252	0.7853346245149013	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2190	0.5288692582065294	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1265	0.30548840713756154	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	1007	0.24318326165021698	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	871	0.21034023922277953	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT	762	0.18401752271843627	No Hit
GAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	737	0.17798020241927498	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGAGTCTT	708	0.17097691087224787	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTA	622	0.15020852904313303	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTC	614	0.14827658654740142	No Hit
TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	454	0.10963773663276913	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACGG	45	3.8380676E-10	45.000004	2
GATCCGC	25	3.8864688E-5	45.0	17
TCTTACG	20	7.0280524E-4	45.0	37
GCCGCAT	25	3.8864688E-5	45.0	19
TGGCACG	20	7.0280524E-4	45.0	1
GTTAACG	20	7.0280524E-4	45.0	1
CTCGAAT	25	3.8864688E-5	45.0	43
CATCGCC	25	3.8864688E-5	45.0	23
ATACGGA	20	7.0280524E-4	45.0	28
ATCGCCA	25	3.8864688E-5	45.0	24
AGTCGAG	20	7.0280524E-4	45.0	1
ATATGCG	30	2.1621254E-6	44.999996	1
TCGGACG	30	2.1621254E-6	44.999996	1
CTATTGG	30	2.1621254E-6	44.999996	2
TAAGGGT	85	0.0	42.35294	4
TATGCGG	75	0.0	42.0	2
CGAATAT	75	0.0	42.0	14
TACGGCT	465	0.0	41.6129	7
CGACGGT	65	0.0	41.53846	28
CGGTCTA	65	0.0	41.53846	31