SRR3550733_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550733_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339806
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2051	0.6035796895875882	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	1934	0.5691482787237424	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	1348	0.3966969388415743	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	1286	0.3784512339393654	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1276	0.3755083783099769	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	659	0.19393418597670437	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	624	0.1836341912738445	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	488	0.14361135471416042	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	450	0.13242850332248401	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	345	0.10152851921390442	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGCGAG	25	3.8849867E-5	45.000004	1
ACGACTC	25	3.8849867E-5	45.000004	40
GTACGAG	25	3.8849867E-5	45.000004	1
AACGTCT	40	6.7902874E-9	45.0	33
TAACGTC	40	6.7902874E-9	45.0	32
CACGACT	20	7.026267E-4	45.0	39
CGATGTT	20	7.026267E-4	45.0	13
CGTTTTT	965	0.0	42.901554	1
ATAACGT	45	1.9213985E-8	40.0	31
ACGGGCG	40	3.4486402E-7	39.375	5
TACGGGC	75	0.0	39.0	4
CGTCGGG	35	6.2353065E-6	38.57143	3
AATGGGT	65	9.094947E-12	38.07692	4
CGTAAGG	65	9.094947E-12	38.07692	2
ACGTTAG	30	1.13823015E-4	37.500004	1
TGTTCGG	30	1.13823015E-4	37.500004	2
AGCTGCG	30	1.13823015E-4	37.500004	1
CGATGTA	30	1.13823015E-4	37.500004	10
GTAAGCG	30	1.13823015E-4	37.500004	1
CTAATGG	30	1.13823015E-4	37.500004	2