SRR3550722_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550722_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	438989
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	5694	1.2970712250193057	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	5530	1.259712657948149	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	5025	1.1446756069058677	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	1722	0.3922649542471452	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1183	0.26948283442181925	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	1011	0.23030189822524028	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCT	995	0.2266571599743957	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGTACCGT	876	0.19954941923373934	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	798	0.18178132026087215	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTC	785	0.17881997043206094	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTA	738	0.16811355182020504	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTT	729	0.166063386554105	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	615	0.14009462651683754	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	603	0.13736107282870413	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	65	0.0	45.000004	31
CTCGTAT	20	7.0285174E-4	45.0	43
CGCGGGT	20	7.0285174E-4	45.0	4
GGGTACG	50	2.1827873E-11	45.0	7
TACGGTT	25	3.8868522E-5	45.0	33
TACGGAT	20	7.0285174E-4	45.0	18
TAACGCC	25	3.8868522E-5	45.0	12
TCTCGTA	25	3.8868522E-5	45.0	28
CGGGCTA	25	3.8868522E-5	45.0	6
GACGGGC	40	6.7993824E-9	45.0	4
TCGTACG	25	3.8868522E-5	45.0	30
ATAACGC	25	3.8868522E-5	45.0	11
TCGAGAG	20	7.0285174E-4	45.0	1
AGGGCGC	25	3.8868522E-5	45.0	6
TCGAAAG	20	7.0285174E-4	45.0	1
TACGGCT	665	0.0	42.969925	7
ACGGCTG	705	0.0	40.531918	8
CATGCGG	45	1.9235813E-8	40.0	2
TATACTC	45	1.9235813E-8	40.0	43
CGGCTGT	725	0.0	39.724136	9