SRR3550720_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550720_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	157471
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCG	1094	0.6947310933441713	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGC	1025	0.6509135015336157	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTC	787	0.49977456166532247	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	539	0.3422852461723111	No Hit
GCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC	414	0.26290555086333356	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTT	408	0.2590953254885026	No Hit
CCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC	194	0.12319728711953312	No Hit
CTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGCT	170	0.10795638562020944	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCT	168	0.10668631049526581	No Hit
GAACTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCT	163	0.10351112268290669	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	25	3.8754348E-5	45.0	1
ATAGCGG	25	3.8754348E-5	45.0	2
ACGGGCA	20	7.014732E-4	45.0	5
ATCCGGG	25	3.8754348E-5	45.0	3
AACGGGC	25	3.8754348E-5	45.0	4
AGTGCGG	25	3.8754348E-5	45.0	2
CGAATAT	20	7.014732E-4	45.0	14
GCGGCTA	20	7.014732E-4	45.0	24
ACGTAAG	20	7.014732E-4	45.0	1
CGGTAGT	20	7.014732E-4	45.0	12
GGCGACT	20	7.014732E-4	45.0	10
CGCCGGT	20	7.014732E-4	45.0	28
GATTCAT	20	7.014732E-4	45.0	45
GTTATAG	20	7.014732E-4	45.0	1
AGCACGG	20	7.014732E-4	45.0	2
ACGGGAC	30	2.1535434E-6	44.999996	5
CGTTTTT	370	0.0	42.567566	1
AAGGGCC	75	0.0	42.0	5
CACGGGA	70	0.0	41.785717	4
TAACGGG	55	6.002665E-11	40.90909	3