##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550720_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 157471 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.46710187907615 33.0 31.0 34.0 31.0 34.0 2 32.541109156606616 34.0 31.0 34.0 31.0 34.0 3 32.60299991744512 34.0 31.0 34.0 31.0 34.0 4 36.17617212058093 37.0 35.0 37.0 35.0 37.0 5 36.15630179525119 37.0 35.0 37.0 35.0 37.0 6 36.13269744905411 37.0 35.0 37.0 35.0 37.0 7 36.298131084453644 37.0 37.0 37.0 35.0 37.0 8 36.14736046637159 37.0 37.0 37.0 35.0 37.0 9 38.052003225990816 39.0 39.0 39.0 35.0 39.0 10 37.40035943126036 39.0 37.0 39.0 34.0 39.0 11 37.45096557461374 39.0 37.0 39.0 35.0 39.0 12 37.48497818645973 39.0 37.0 39.0 35.0 39.0 13 37.4230810752456 39.0 37.0 39.0 35.0 39.0 14 38.621034984219314 40.0 38.0 41.0 35.0 41.0 15 38.708562211454804 40.0 38.0 41.0 35.0 41.0 16 38.7093814099104 40.0 38.0 41.0 35.0 41.0 17 38.67670872732122 40.0 38.0 41.0 35.0 41.0 18 38.61517993789332 40.0 38.0 41.0 35.0 41.0 19 38.50240996754958 40.0 37.0 41.0 35.0 41.0 20 38.51653955331458 40.0 38.0 41.0 35.0 41.0 21 38.51735875177017 40.0 38.0 41.0 35.0 41.0 22 38.60407948130132 40.0 38.0 41.0 35.0 41.0 23 38.600148598789616 40.0 38.0 41.0 35.0 41.0 24 38.6074642315093 40.0 38.0 41.0 35.0 41.0 25 38.40733849407192 40.0 37.0 41.0 35.0 41.0 26 38.45314375345302 40.0 38.0 41.0 35.0 41.0 27 38.47520495837329 40.0 38.0 41.0 35.0 41.0 28 38.34694642188085 40.0 37.0 41.0 35.0 41.0 29 38.322649884740684 40.0 37.0 41.0 35.0 41.0 30 38.230455131421024 40.0 37.0 41.0 34.0 41.0 31 38.236208571737016 40.0 37.0 41.0 34.0 41.0 32 38.19028265521906 40.0 37.0 41.0 34.0 41.0 33 38.054879946148816 40.0 37.0 41.0 34.0 41.0 34 37.989426624584844 40.0 37.0 41.0 34.0 41.0 35 37.93784252338526 40.0 37.0 41.0 34.0 41.0 36 37.80449733601743 40.0 37.0 41.0 34.0 41.0 37 37.75747915489201 40.0 37.0 41.0 34.0 41.0 38 37.66745623003601 40.0 37.0 41.0 34.0 41.0 39 37.598573705634685 40.0 37.0 41.0 33.0 41.0 40 37.51149100469293 40.0 36.0 41.0 33.0 41.0 41 37.333483625556454 40.0 36.0 41.0 33.0 41.0 42 37.35022956607883 40.0 36.0 41.0 33.0 41.0 43 37.2652869417226 40.0 36.0 41.0 33.0 41.0 44 37.22044058906084 40.0 36.0 41.0 33.0 41.0 45 37.19482952416635 40.0 35.0 41.0 33.0 41.0 46 37.076642683414725 40.0 35.0 41.0 33.0 41.0 47 37.04678956760292 40.0 35.0 41.0 32.0 41.0 48 36.939265007525194 39.0 35.0 41.0 32.0 41.0 49 36.822722914060364 39.0 35.0 41.0 32.0 41.0 50 36.70016701487893 39.0 35.0 41.0 32.0 41.0 51 35.54419543916023 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 0.0 11 1.0 12 1.0 13 4.0 14 4.0 15 5.0 16 7.0 17 9.0 18 31.0 19 60.0 20 113.0 21 207.0 22 281.0 23 406.0 24 578.0 25 809.0 26 1019.0 27 1195.0 28 1287.0 29 1312.0 30 1410.0 31 1740.0 32 2359.0 33 3416.0 34 7630.0 35 10626.0 36 8997.0 37 15453.0 38 35452.0 39 63028.0 40 28.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.60557181957313 22.55526414387411 26.796044986060924 10.043119050491836 2 30.9409351563145 27.781623283017193 25.380546259311238 15.896895301357075 3 29.802947844364997 26.818271300747437 27.501571717967117 15.877209136920447 4 26.7268258917515 25.647897073111874 30.100145423601806 17.52513161153482 5 26.224511179836284 30.016955502917998 25.97430638022239 17.784226937023327 6 24.416559239479017 36.56673292225235 25.46056099218269 13.556146846085944 7 79.3168265902928 5.996659702421399 10.818499914269928 3.8680137930158573 8 80.94315778778315 7.112420699684387 7.910662915711464 4.033758596821002 9 74.07395647452547 7.98940757345797 10.162506112236539 7.774129839780023 10 39.00718227483156 28.351887014116883 18.22811819319113 14.412812517860432 11 30.749153812448004 25.952080065535878 25.269414685878672 18.029351436137446 12 26.72873100443891 22.72291406036667 29.93694077004655 20.611414165147867 13 24.842034406335134 24.808377415524127 32.24212712181925 18.10746105632148 14 20.860348889636825 28.59066113760629 30.47735773571007 20.07163223704682 15 20.407567107594417 26.133700808402814 35.09916111537997 18.359570968622794 16 22.980104273167758 25.775539623168708 30.34018962221615 20.90416648144738 17 22.835950746486656 26.143226371839894 28.70179271103886 22.319030170634594 18 23.251265312343225 26.275949222396505 29.717852810993772 20.7549326542665 19 24.002514748747387 28.69353722272672 27.322491125350062 19.981456903175822 20 24.018390687809184 27.880054105200326 28.835150599157938 19.266404607832555 21 23.313498993465466 29.896298366048352 28.55255888385798 18.237643756628206 22 21.586831861104585 26.57505191432073 28.79069796978491 23.04741825478977 23 20.73080122689257 28.600186701043366 28.720843837913012 21.94816823415105 24 21.816715458719383 26.622679731506118 29.18124607070508 22.379358739069417 25 20.76826844307841 30.664693816639254 26.88050498186968 21.68653275841266 26 19.61440519206711 29.05931885871049 28.508106254484954 22.818169694737445 27 21.35567818836484 28.59320128785618 28.600821738605838 21.450298785173143 28 19.57312775050644 27.789878771329324 31.217811533552208 21.419181944612024 29 20.99942211581815 26.491861993636924 30.222072635596398 22.28664325494853 30 21.974839811774867 28.06040477294232 29.858831149862514 20.1059242654203 31 22.324110471134368 28.47889452661125 26.94400873811686 22.252986264137522 32 23.540207403267903 27.835601475827293 27.114198804859306 21.509992316045494 33 22.74958563799049 27.236126016853895 26.948454001054163 23.065834344101454 34 21.32329127267878 26.675387849191278 28.8834134539058 23.117907424224143 35 21.151831130811388 26.59219792850747 29.148224117456543 23.10774682322459 36 22.515256777438385 28.08136101250389 28.94691721015298 20.456464999904746 37 20.466625600904294 28.811019171784015 29.509560490503013 21.212794736808682 38 21.94054778340139 28.638923992354147 26.753497469375315 22.66703075486915 39 22.4428624953166 26.269598846771785 27.25454210616558 24.032996551746034 40 24.601990207720785 24.9487207168304 27.994360866445252 22.454928209003562 41 20.648246343771234 25.508823846930547 28.938026684278373 24.904903125019846 42 21.6338246407275 26.074642315092937 30.12935715147551 22.162175892704052 43 20.98291113919388 25.719021280108716 30.230963161471003 23.067104419226396 44 21.438868109048652 26.36421944358009 28.597011513231006 23.599900934140255 45 20.627925141772135 26.383270570454243 27.58222148840104 25.406582799372586 46 22.40412520400582 28.617332715230106 26.648716271567462 22.329825809196613 47 20.711750100018417 25.630116021362664 31.03682582824774 22.62130805037118 48 21.306780296054512 25.56597722755301 29.55401311987604 23.573229356516435 49 21.315035784366646 24.698515917216504 30.544036679769608 23.442411618647245 50 20.797480170952113 24.776625537400538 29.990283925294182 24.43561036635317 51 20.586647700211465 25.30053152643979 27.58920690158823 26.523613871760514 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 67.0 1 119.0 2 171.0 3 560.0 4 949.0 5 659.0 6 369.0 7 372.0 8 375.0 9 393.0 10 411.0 11 431.5 12 452.0 13 462.5 14 473.0 15 478.5 16 484.0 17 511.5 18 539.0 19 490.5 20 442.0 21 511.0 22 580.0 23 717.5 24 855.0 25 954.0 26 1272.0 27 1491.0 28 1841.0 29 2191.0 30 2464.0 31 2737.0 32 3272.0 33 3807.0 34 4302.0 35 4797.0 36 5272.0 37 5747.0 38 6148.5 39 6550.0 40 7220.5 41 7891.0 42 8704.0 43 9517.0 44 10264.0 45 11011.0 46 14419.5 47 17828.0 48 17065.5 49 16303.0 50 15371.0 51 14439.0 52 12444.5 53 10450.0 54 9324.5 55 8199.0 56 7451.0 57 6703.0 58 6342.5 59 5982.0 60 5431.5 61 4881.0 62 4162.0 63 3443.0 64 2896.5 65 2350.0 66 1916.0 67 1482.0 68 1193.5 69 905.0 70 760.5 71 616.0 72 518.5 73 421.0 74 321.5 75 181.5 76 141.0 77 113.0 78 85.0 79 61.0 80 37.0 81 25.0 82 13.0 83 10.0 84 7.0 85 4.5 86 2.0 87 1.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 157471.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.1724126982111 #Duplication Level Percentage of deduplicated Percentage of total 1 73.08592909489032 36.66897396981032 2 9.882668624299113 9.916746575559944 3 4.990697026845722 7.511859326479161 4 3.1781994000531597 6.378317277466962 5 2.236510688926298 5.610556864438532 6 1.7188350399331704 5.174286059020391 7 1.27330489703444 4.471934514926558 8 0.9189059197286317 3.6882981628363316 9 0.6885465844798562 3.109143905862032 >10 1.9846342729125266 13.213226562351164 >50 0.024048502031465566 0.7823662769652825 >100 0.012657106332350298 1.2865861015679076 >500 0.0025314212664700594 0.8420598078376337 >1k 0.0025314212664700594 1.3456445948777869 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCG 1094 0.6947310933441713 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGC 1025 0.6509135015336157 No Hit GAATCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTC 787 0.49977456166532247 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 539 0.3422852461723111 No Hit GCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC 414 0.26290555086333356 No Hit GAATGCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTT 408 0.2590953254885026 No Hit CCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC 194 0.12319728711953312 No Hit CTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGCT 170 0.10795638562020944 Illumina Single End Adapter 2 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCT 168 0.10668631049526581 No Hit GAACTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCT 163 0.10351112268290669 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11557683636987127 0.0 2 0.0 0.0 0.0 0.6559938020333903 0.0 3 0.0 0.0 0.0 0.9690673203319976 0.0 4 0.0 0.0 0.0 1.4580462434352992 0.0 5 0.0 0.0 0.0 2.853223768185888 0.0 6 0.0 0.0 0.0 3.8813495818277652 0.0 7 0.0 0.0 0.0 4.64720488216878 0.0 8 0.0 0.0 0.0 5.790907532180529 0.0 9 0.0 0.0 0.0 6.34974058715573 0.0 10 0.0 0.0 0.0 8.169758241199967 0.0 11 0.0 0.0 0.0 9.54207441370157 0.0 12 0.0 0.0 0.0 11.275091921687167 0.0 13 0.0 0.0 0.0 11.854881216223939 0.0 14 0.0 0.0 0.0 12.129852480774238 0.0 15 0.0 0.0 0.0 12.49690419188295 0.0 16 0.0 0.0 0.0 13.105905214293426 0.0 17 0.0 0.0 0.0 13.781585180763441 0.0 18 0.0 0.0 0.0 14.608404087101752 0.0 19 0.0 0.0 0.0 15.178032780638976 0.0 20 0.0 0.0 0.0 15.691143131116206 0.0 21 0.0 0.0 0.0 16.267122200278145 0.0 22 0.0 0.0 0.0 16.96185329362232 0.0 23 0.0 0.0 0.0 17.64261356059211 0.0 24 0.0 0.0 0.0 18.150643610569563 0.0 25 0.0 0.0 0.0 18.64660794686006 0.0 26 0.0 0.0 0.0 19.102564916714822 0.0 27 0.0 0.0 0.0 19.559791961694533 0.0 28 0.0 0.0 0.0 20.024004419861434 0.0 29 0.0 0.0 0.0 20.5498155215881 0.0 30 0.0 0.0 0.0 21.129604816124875 0.0 31 0.0 0.0 0.0 21.66938674422592 0.0 32 0.0 0.0 0.0 22.14375980339237 0.0 33 0.0 0.0 0.0 22.644804440182636 0.0 34 0.0 0.0 0.0 23.1414038140356 0.0 35 0.0 0.0 0.0 23.68563100507395 0.0 36 0.0 0.0 0.0 24.182865416489385 0.0 37 0.0 0.0 0.0 24.680734865467294 0.0 38 0.0 0.0 0.0 25.18876491544475 0.0 39 0.0 0.0 0.0 25.764108947044218 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGTGCG 25 3.8754348E-5 45.0 1 ATAGCGG 25 3.8754348E-5 45.0 2 ACGGGCA 20 7.014732E-4 45.0 5 ATCCGGG 25 3.8754348E-5 45.0 3 AACGGGC 25 3.8754348E-5 45.0 4 AGTGCGG 25 3.8754348E-5 45.0 2 CGAATAT 20 7.014732E-4 45.0 14 GCGGCTA 20 7.014732E-4 45.0 24 ACGTAAG 20 7.014732E-4 45.0 1 CGGTAGT 20 7.014732E-4 45.0 12 GGCGACT 20 7.014732E-4 45.0 10 CGCCGGT 20 7.014732E-4 45.0 28 GATTCAT 20 7.014732E-4 45.0 45 GTTATAG 20 7.014732E-4 45.0 1 AGCACGG 20 7.014732E-4 45.0 2 ACGGGAC 30 2.1535434E-6 44.999996 5 CGTTTTT 370 0.0 42.567566 1 AAGGGCC 75 0.0 42.0 5 CACGGGA 70 0.0 41.785717 4 TAACGGG 55 6.002665E-11 40.90909 3 >>END_MODULE