SRR3550718_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550718_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	125267
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1341	1.0705133834130298	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	377	0.3009571555158182	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	370	0.295369091620299	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCC	364	0.2905793225669969	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	282	0.22511914550520087	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTG	242	0.19318735181651991	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	216	0.17243168591887728	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	174	0.13890330254576225	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	160	0.12772717475472392	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	152	0.12134081601698772	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	145	0.11575275212146853	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	142	0.11335786759481747	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTT	135	0.10776980369929831	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	134	0.10697150885708127	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACAAGG	30	2.149989E-6	45.000004	1
ATATGGG	60	0.0	45.000004	3
ATCCTGC	25	3.8708637E-5	45.0	20
CATATGC	25	3.8708637E-5	45.0	33
CGAAAGG	25	3.8708637E-5	45.0	2
GGATGAC	20	7.009212E-4	45.0	8
GGACTCA	25	3.8708637E-5	45.0	8
GGATCCC	20	7.009212E-4	45.0	8
GTCAGAG	20	7.009212E-4	45.0	1
GCGATTA	20	7.009212E-4	45.0	9
TAGGCGG	20	7.009212E-4	45.0	2
AGTAGCA	25	3.8708637E-5	45.0	28
AAGTGCG	25	3.8708637E-5	45.0	1
CGTTTTT	785	0.0	42.993633	1
TAGCGGG	75	0.0	42.000004	3
TAATGGG	65	0.0	41.538464	3
GGTACCT	55	6.002665E-11	40.909092	8
ATAGGGC	50	1.0659278E-9	40.5	4
TGGGGCA	45	1.9048457E-8	40.0	6
AGGGCAC	45	1.9048457E-8	40.0	6