SRR3550716_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550716_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	665144
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4617	0.6941354052656267	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	3801	0.571455203685217	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	3296	0.49553179461890956	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	3131	0.4707251362111062	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1332	0.20025738787390399	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT	1009	0.15169647474832518	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	930	0.13981934738943746	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	751	0.11290788160157801	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	702	0.10554105577138184	No Hit
CGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	696	0.10463899546564352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	35	1.2109012E-7	45.0	1
GCGAAAA	25	3.8890277E-5	45.0	1
TACGATA	25	3.8890277E-5	45.0	31
GACGGCG	20	7.0311414E-4	45.0	9
AATAGCG	50	2.1827873E-11	45.0	1
CGTTTTT	2590	0.0	42.046333	1
AGGGCGC	55	6.002665E-11	40.909092	6
ATAGCGG	90	0.0	40.000004	2
TTAACGG	45	1.9261279E-8	40.000004	2
TACGTAG	45	1.9261279E-8	40.000004	1
CTAGCGG	75	0.0	39.0	2
CGAACGG	35	6.2443214E-6	38.571426	2
GCGATCG	35	6.2443214E-6	38.571426	9
TCGAAAG	35	6.2443214E-6	38.571426	1
TACGAAT	100	0.0	38.25	12
CGAATAT	100	0.0	38.25	14
TAGGGCG	160	0.0	37.96875	5
CGCGAAT	30	1.139405E-4	37.499996	27
ACGATAG	30	1.139405E-4	37.499996	1
TTACGAT	30	1.139405E-4	37.499996	30