SRR3550714_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550714_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	525291
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1862	0.3544701889048166	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTC	1392	0.264995973660314	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	1292	0.2459589065870156	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	1238	0.23567889036743445	No Hit
GCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	773	0.14715652847659677	No Hit
CCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	642	0.12221797061057586	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAACGG	55	1.8189894E-12	45.000004	2
ACGCGAA	20	7.029786E-4	45.0	37
GCGAAAC	20	7.029786E-4	45.0	31
GTTAGCG	25	3.8879036E-5	45.0	1
TCGATTA	20	7.029786E-4	45.0	41
CTACGCG	20	7.029786E-4	45.0	1
GATATCA	20	7.029786E-4	45.0	9
TCGTAAG	20	7.029786E-4	45.0	1
CGTAAGG	100	0.0	45.0	2
ATCGGAA	20	7.029786E-4	45.0	21
TATAACG	20	7.029786E-4	45.0	1
GCGTAAG	50	2.1827873E-11	45.0	1
GCGAAGG	95	0.0	42.63158	2
CCCGATC	60	3.6379788E-12	41.249996	41
CGTTCAT	55	6.002665E-11	40.909092	17
CCCCGAT	55	6.002665E-11	40.909092	40
CGATCCC	55	6.002665E-11	40.909092	43
TCGACAA	50	1.0786607E-9	40.5	19
CACGACG	45	1.9248546E-8	40.000004	26
TAGGGCG	125	0.0	39.600002	5