SRR3550713_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550713_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	554467
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8145	1.468978316112591	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	6339	1.1432601038474788	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG	5641	1.0173734415213167	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	5106	0.9208843808558489	No Hit
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	2389	0.43086423538280905	No Hit
GAACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT	1655	0.29848485121747553	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTT	1464	0.26403735479298135	No Hit
CGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTG	1419	0.25592145249401677	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCT	1104	0.19911013640126463	No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	1001	0.1805337378058568	No Hit
CCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	899	0.16213769259487038	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTC	849	0.15312002337379862	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTT	843	0.15203790306727002	No Hit
CGTCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT	760	0.13706857216029086	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAACGACGT	749	0.1350846849316551	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAACGACGTCGTA	697	0.12570630894174042	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	646	0.11650828633624724	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCT	638	0.11506545926087575	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTCG	30	2.1634605E-6	45.000004	40
GCTACGA	30	2.1634605E-6	45.000004	10
CCACGAA	35	1.2104101E-7	45.000004	25
TGCGTAG	30	2.1634605E-6	45.000004	1
CGGGTCC	40	6.8048394E-9	45.0	6
CGAACGG	20	7.0301234E-4	45.0	2
GACCGAC	25	3.8881844E-5	45.0	9
CCGTCGA	20	7.0301234E-4	45.0	41
CGTAGAT	20	7.0301234E-4	45.0	37
CGGGCTA	25	3.8881844E-5	45.0	6
CAAGCGT	20	7.0301234E-4	45.0	38
GATCTCG	20	7.0301234E-4	45.0	9
CGTCATA	50	2.1827873E-11	45.0	38
TCGCGTC	25	3.8881844E-5	45.0	40
CCGCAGG	40	6.8048394E-9	45.0	2
CGTTTTT	5175	0.0	44.173912	1
CGGCGAA	70	0.0	41.785717	31
GCATGCG	65	0.0	41.538464	1
AACGAGC	115	0.0	41.08696	15
TCTTGCG	55	6.002665E-11	40.909092	1