SRR3550709_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550709_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478943
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT	1521	0.31757432512845996	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1476	0.308178635035902	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	1327	0.2770684611738766	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC	898	0.18749621562482383	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	811	0.16933121477921173	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	694	0.14490242053856095	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	532	0.11107793620535221	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	506	0.10564931526298535	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	20	7.029159E-4	45.000004	21
GTTAACG	20	7.029159E-4	45.000004	1
ACGTAAG	25	3.887385E-5	45.000004	1
AATACGG	25	3.887385E-5	45.000004	2
GCTACGA	90	0.0	42.500004	10
GCGATTA	55	6.002665E-11	40.909092	9
CGTTTTT	915	0.0	40.32787	1
CAATCGG	35	6.24066E-6	38.571426	2
CTACGAA	100	0.0	38.250004	11
TCGATCA	65	9.094947E-12	38.076927	17
AAGGGTA	130	0.0	38.076927	5
TGCGTGG	65	9.094947E-12	38.076927	2
AGCGACG	30	1.1389276E-4	37.500004	1
ACGTAGG	30	1.1389276E-4	37.500004	2
CACAACG	30	1.1389276E-4	37.500004	12
GGCGATT	205	0.0	37.317074	8
GGGCGAT	750	0.0	36.9	7
TATACTG	105	0.0	36.42857	18
ATTTACG	25	0.0021058838	36.000004	1
TTTCGAT	25	0.0021058838	36.000004	28