SRR3550703_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550703_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	316480
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT	2023	0.6392189079878665	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	1456	0.46006066734074824	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	1009	0.318819514661274	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCC	770	0.24330131445904954	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	594	0.18768958543983824	No Hit
TCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	514	0.16241152679474216	No Hit
ACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	456	0.14408493427704752	No Hit
AGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	347	0.10964357937310414	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	334	0.10553589484327605	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	323	0.10206016177957533	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	25	3.884377E-5	45.000004	28
AAGACGG	25	3.884377E-5	45.000004	2
GCGATGA	45	3.8380676E-10	45.000004	9
CGGTCTA	25	3.884377E-5	45.000004	31
ATTGCGG	35	1.208191E-7	45.000004	2
ACGGTCT	25	3.884377E-5	45.000004	30
CGTGAAG	20	7.025531E-4	45.0	34
TTATGCG	20	7.025531E-4	45.0	1
GTAATTG	20	7.025531E-4	45.0	1
GTATGCG	20	7.025531E-4	45.0	1
GTTCCGA	20	7.025531E-4	45.0	9
ACGTAAT	20	7.025531E-4	45.0	26
AATACGG	20	7.025531E-4	45.0	2
TCGGTCT	40	6.7884685E-9	45.0	13
TAGACGG	30	2.1604992E-6	44.999996	2
CTAACGG	30	2.1604992E-6	44.999996	2
CGGTAGT	90	0.0	42.500004	12
TAACGGG	85	0.0	42.35294	3
TAGGGAT	105	0.0	40.714283	5
ATAGCGG	50	1.0768417E-9	40.500004	2