SRR3550700_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550700_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527010
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7946	1.5077512760668679	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTT	2419	0.45900457296825486	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTC	1997	0.37893019107796816	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTG	1553	0.29468131534505987	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCT	1551	0.2943018159048216	No Hit
CTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGCT	1549	0.2939223164645832	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	1363	0.25862886852241895	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCC	1147	0.21764292897667975	No Hit
CGTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCT	1008	0.19126771788011615	No Hit
GCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	984	0.18671372459725621	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTC	806	0.15293827441604524	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCG	557	0.10569059410637369	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGT	550	0.10436234606553955	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGA	20	7.029805E-4	45.000004	21
CCGATAC	20	7.029805E-4	45.000004	11
GCGTTAG	20	7.029805E-4	45.000004	1
TGCGATG	20	7.029805E-4	45.000004	1
AATAGCG	20	7.029805E-4	45.000004	1
GCGTCAT	20	7.029805E-4	45.000004	37
CGTCATA	20	7.029805E-4	45.000004	38
TGTTACG	25	3.887921E-5	45.0	1
GCTACGA	25	3.887921E-5	45.0	10
TTAGGCG	30	2.1632568E-6	44.999996	1
TGTAGCG	30	2.1632568E-6	44.999996	1
CGTTTTT	5220	0.0	44.008617	1
ATTGCGG	95	0.0	42.63158	2
CGTTTTC	135	0.0	41.666664	1
CGTTTCT	330	0.0	41.590908	1
CTTGCGG	60	3.6379788E-12	41.249996	2
CGTTAGG	50	1.0786607E-9	40.5	2
AGCGATG	45	1.9248546E-8	40.0	1
CGTTTGA	45	1.9248546E-8	40.0	11
GTTTTTT	5890	0.0	38.73514	2