SRR3550695_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550695_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	489010
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1969	0.40265025255107256	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	1724	0.3525490276272469	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCC	1315	0.2689106562237991	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1308	0.26747919265454695	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1229	0.2513241038015583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGTC	25	3.8875063E-5	45.0	32
TCGTGCG	35	1.21001E-7	45.0	1
TTACGTT	40	6.8012014E-9	45.0	13
CGTGTAA	20	7.029306E-4	45.0	39
CGTTTTT	1295	0.0	41.872585	1
CGGGCAA	55	6.002665E-11	40.909092	6
CGTGTAC	55	6.002665E-11	40.909092	18
TTTACGT	45	1.9244908E-8	40.0	12
TCAAGCG	80	0.0	39.375	17
GTGCGAG	40	3.4527875E-7	39.375	1
TAGGGAC	425	0.0	38.64706	5
CTACGAA	35	6.240929E-6	38.571426	11
GCTACGA	35	6.240929E-6	38.571426	10
TCGACAC	35	6.240929E-6	38.571426	34
AACGTCT	30	1.1389631E-4	37.499996	33
GCTTACG	30	1.1389631E-4	37.499996	1
TCGTCCC	30	1.1389631E-4	37.499996	38
CGACTGG	60	1.546141E-10	37.499996	2
CGTCCCC	30	1.1389631E-4	37.499996	39
GGCTACG	30	1.1389631E-4	37.499996	1