SRR3550690_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550690_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	502114
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3018	0.6010587237161282	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	2048	0.40787550237595444	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCC	1536	0.30590662678196584	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	1444	0.28758409444867106	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	1204	0.23978618401398885	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTG	693	0.13801646638014475	No Hit
TCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	586	0.11670656464468228	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC	577	0.1149141430033817	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTT	538	0.10714698255774584	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCT	537	0.10694782459760134	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	523	0.10415961315557822	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAAGCGT	25	3.887657E-5	45.0	29
TTTCGAC	20	7.029488E-4	45.0	24
CGCATCG	25	3.887657E-5	45.0	21
TCTACGG	20	7.029488E-4	45.0	2
CCAGTCG	20	7.029488E-4	45.0	28
CCCGGGT	20	7.029488E-4	45.0	4
CCACGCG	20	7.029488E-4	45.0	1
CGTTTAC	25	3.887657E-5	45.0	33
TTCGACG	20	7.029488E-4	45.0	25
AATACGG	20	7.029488E-4	45.0	2
AGTACGG	45	3.8380676E-10	45.0	2
GCCCGAC	20	7.029488E-4	45.0	9
CCCGACG	20	7.029488E-4	45.0	10
ATAACGG	30	2.1630512E-6	44.999996	2
CGTTTTT	1490	0.0	42.432884	1
TACGAAT	85	0.0	42.35294	12
GCTACGA	85	0.0	42.35294	10
CGTGTAC	60	3.6379788E-12	41.249996	18
CGCACGG	55	6.002665E-11	40.909092	2
CTACGAA	90	0.0	40.0	11