SRR3550689_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550689_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	236371
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	1433	0.6062503437392912	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	989	0.41841004184100417	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	877	0.37102690262341825	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCC	638	0.26991466804303405	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	450	0.19037868435637198	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	443	0.18741723815527286	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCG	407	0.1721869434067631	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTC	396	0.16753324223360733	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGC	356	0.15061069251304093	No Hit
ACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	306	0.12945750536233294	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG	280	0.11845784804396478	No Hit
ACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG	267	0.1129580193847807	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTACG	20	7.021905E-4	45.000004	32
GTTTACG	20	7.021905E-4	45.000004	1
GACGTAG	20	7.021905E-4	45.000004	1
TAGCCGT	20	7.021905E-4	45.000004	44
ACGGGCT	40	6.7757355E-9	45.000004	5
GTAGCCG	20	7.021905E-4	45.000004	43
CGAGGAC	20	7.021905E-4	45.000004	4
TTAGTAG	20	7.021905E-4	45.000004	1
GGGTTAC	20	7.021905E-4	45.000004	8
CGTCAAA	20	7.021905E-4	45.000004	12
TAATGCG	20	7.021905E-4	45.000004	1
GCGTAAG	20	7.021905E-4	45.000004	1
CGGGTAT	25	3.8813756E-5	45.0	6
ACACGCG	35	1.2064629E-7	45.0	36
TACGGGT	25	3.8813756E-5	45.0	4
CGACAGG	45	3.8198777E-10	45.0	2
CTAACGG	25	3.8813756E-5	45.0	2
TTACACG	35	1.2064629E-7	45.0	34
CGTTCTG	30	2.1581618E-6	44.999996	1
ACGAAGG	30	2.1581618E-6	44.999996	2