SRR3550686_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550686_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	531232
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2252	0.42392024576832726	No Hit
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	2048	0.385518944641889	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC	1734	0.32641105957472444	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1420	0.2673031745075598	No Hit
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1411	0.265608999457864	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT	821	0.1545464128666948	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTT	806	0.15172278778386844	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTC	744	0.14005180410818627	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC	725	0.13647521233660623	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC	713	0.13421631227034514	No Hit
TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	638	0.12009818685621348	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCA	20	7.029855E-4	45.000004	4
GACCGCA	20	7.029855E-4	45.000004	1
TCTAGCG	20	7.029855E-4	45.000004	1
AAACGCG	20	7.029855E-4	45.000004	1
TATAGCG	20	7.029855E-4	45.000004	1
TAGGCCG	20	7.029855E-4	45.000004	1
GGTTCGC	20	7.029855E-4	45.000004	10
TCACGAC	25	3.8879625E-5	45.0	25
CGACGGT	25	3.8879625E-5	45.0	28
TCCGACC	25	3.8879625E-5	45.0	29
TCGTAAG	25	3.8879625E-5	45.0	1
CGGTCTA	25	3.8879625E-5	45.0	31
GCGTAAG	30	2.1632895E-6	44.999996	1
CGTTTTT	1510	0.0	41.42384	1
CGTATGG	45	1.9250365E-8	40.0	2
ATATGCG	35	6.241944E-6	38.57143	1
CGACAGG	100	0.0	38.25	2
CGTAAGG	65	9.094947E-12	38.07692	2
TATCAGG	30	1.1390956E-4	37.499996	2
AGCGTCG	30	1.1390956E-4	37.499996	17