SRR3550678_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550678_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	514365
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC	9334	1.81466468363905	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCG	8636	1.6789633820341585	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGC	8182	1.590699211649315	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2393	0.4652338320064546	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	2269	0.4411264374520039	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCT	1771	0.34430803028977475	No Hit
GAACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCT	1683	0.32719955673500334	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTGGAT	1375	0.2673198992933034	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTA	1290	0.2507946691551719	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTC	1272	0.2472952086553323	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	944	0.18352726176936612	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTT	755	0.14678292652105024	No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	693	0.1347292292438249	Illumina Single End Adapter 2 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	678	0.13181301216062524	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	536	0.104206157106335	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAATCG	30	2.163153E-6	45.000004	20
CAAACGA	25	3.88779E-5	45.0	15
CGAATAT	95	0.0	45.0	14
CGAATAC	20	7.029649E-4	45.0	45
CGTAATC	20	7.029649E-4	45.0	43
TATAGCG	25	3.88779E-5	45.0	1
CGATCGA	150	0.0	45.0	41
CGTTTAC	20	7.029649E-4	45.0	33
TCGAATA	20	7.029649E-4	45.0	44
AGTACGG	40	6.8030204E-9	45.0	2
CCGATCG	145	0.0	43.448273	40
CGAATGC	100	0.0	42.75	45
GACCTAT	80	0.0	42.1875	33
TACGGCT	870	0.0	41.63793	7
TGATACC	1060	0.0	41.39151	4
ATCGAAT	150	0.0	40.5	43
CCGATGA	895	0.0	40.474857	18
GATACCT	1110	0.0	40.135136	5
CGATGAA	925	0.0	39.648647	19
ACGGCTG	910	0.0	39.56044	8