SRR3550677_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550677_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	260059
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	1470	0.5652563456754045	No Hit
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	1145	0.44028470462471975	Illumina Single End Adapter 2 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	1020	0.3922186888359949	No Hit
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	957	0.3679934168784776	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGC	871	0.33492399801583483	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	826	0.3176202323318939	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCG	814	0.31300589481617636	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC	701	0.269554216543169	No Hit
TCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	664	0.2553266758697065	No Hit
ACTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	440	0.16919237557631153	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	439	0.16880784745000174	No Hit
ACCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	357	0.13727654109259824	No Hit
AGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	320	0.12304900041913566	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCT	318	0.12227994416651605	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	314	0.12074183166127686	No Hit
GCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	286	0.1099750441246025	No Hit
GGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	265	0.10189995347209672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	20	7.023209E-4	45.000004	28
TAAGTAG	20	7.023209E-4	45.000004	1
AGGCGAT	20	7.023209E-4	45.000004	6
TATGCGC	20	7.023209E-4	45.000004	22
AACGGGC	20	7.023209E-4	45.000004	4
GCCGATG	20	7.023209E-4	45.000004	9
TGCGCGC	20	7.023209E-4	45.000004	15
AGCGATG	20	7.023209E-4	45.000004	1
CTATTAG	20	7.023209E-4	45.000004	1
GTAAGCG	20	7.023209E-4	45.000004	1
CCTGCGT	20	7.023209E-4	45.000004	23
TACGTAG	20	7.023209E-4	45.000004	1
CCTCGTC	35	1.2070814E-7	45.0	36
CTACGAA	35	1.2070814E-7	45.0	11
TCGTCCC	35	1.2070814E-7	45.0	38
GCTACGA	35	1.2070814E-7	45.0	10
CCTATGC	35	1.2070814E-7	45.0	35
CAACGAG	30	2.159004E-6	44.999996	14
GCGCGAC	25	3.8824568E-5	44.999996	9
TGATTCA	30	2.159004E-6	44.999996	44