SRR3550672_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550672_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	522913
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1017	0.19448741951337986	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	930	0.17784985265235326	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	657	0.125642315260856	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	641	0.12258253284963275	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	624	0.11933151403770799	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	596	0.11397689481806725	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	549	0.10498878398509887	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	548	0.10479754758439741	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	538	0.10288518357738285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	20	7.029757E-4	45.0	28
TATTGCG	20	7.029757E-4	45.0	1
ATTCACG	20	7.029757E-4	45.0	1
TGCGATG	35	1.2102282E-7	45.0	1
CTACGCG	20	7.029757E-4	45.0	1
GCGCGAC	70	0.0	41.785713	9
CGAATAT	130	0.0	41.53846	14
CGACCCG	50	1.0786607E-9	40.5	32
GTATGCG	50	1.0786607E-9	40.5	1
TACGAAT	140	0.0	40.17857	12
GGCGTAG	45	1.9248546E-8	40.0	1
ATTACGG	35	6.2417585E-6	38.571426	2
GGTATAC	35	6.2417585E-6	38.571426	8
ATGCGAG	35	6.2417585E-6	38.571426	1
GCTCGAG	35	6.2417585E-6	38.571426	1
AAGTACG	30	1.1390711E-4	37.499996	1
TGCGCAA	30	1.1390711E-4	37.499996	26
CCCTCGT	115	0.0	37.173916	14
CGTGGCG	55	2.743036E-9	36.81818	27
ACCCGCT	55	2.743036E-9	36.81818	34