SRR3550671_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550671_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	537891
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	827	0.1537486219326964	No Hit
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	826	0.15356271066071006	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	20	7.0299365E-4	45.0	1
TCGTTTA	20	7.0299365E-4	45.0	38
GTCGAAG	20	7.0299365E-4	45.0	1
CGACGGT	20	7.0299365E-4	45.0	28
AAGCGTA	20	7.0299365E-4	45.0	27
TCGTGCG	20	7.0299365E-4	45.0	1
CCCCGAT	25	3.8880284E-5	45.0	40
CGTAAGG	65	0.0	44.999996	2
CGTATGG	80	0.0	42.1875	2
TCTACGG	35	6.2420913E-6	38.57143	2
AGTTGCG	35	6.2420913E-6	38.57143	1
AGTAGCG	35	6.2420913E-6	38.57143	1
AACACGT	70	0.0	38.57143	41
TATGCGG	65	9.094947E-12	38.07692	2
CCATCGA	65	9.094947E-12	38.07692	31
ACATACG	95	0.0	37.894737	17
TAACCGG	30	1.1391144E-4	37.500004	2
CGGATGG	30	1.1391144E-4	37.500004	2
CCCGATC	30	1.1391144E-4	37.500004	41
TACACGC	115	0.0	37.173912	35