SRR3550667_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550667_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	743907
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5412	0.7275102936254129	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTT	1437	0.1931693074537543	No Hit
CGCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTG	1341	0.18026446854243877	No Hit
GCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	1116	0.15001875234404302	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTC	1082	0.14544828856295208	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCT	1033	0.13886144370196812	No Hit
CCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	1026	0.13792046586468468	TruSeq Adapter, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGCT	905	0.12165499182021408	Illumina Single End Adapter 1 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCT	851	0.11439601993259911	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATG	20	7.0316816E-4	45.0	1
CGAATAT	75	0.0	42.0	14
CGTTTTT	2810	0.0	41.236656	1
CGTAAGG	50	1.0804797E-9	40.5	2
AAGCACG	45	1.9266736E-8	40.0	1
CCTCGTC	80	0.0	39.375	36
TACGAAT	80	0.0	39.375	12
TAGGGAT	740	0.0	38.61487	5
TTATGCG	35	6.2453164E-6	38.57143	1
TATAGCG	35	6.2453164E-6	38.57143	1
TCGTTAG	30	1.13953465E-4	37.500004	1
GGTAACG	30	1.13953465E-4	37.500004	1
CTAAGCG	30	1.13953465E-4	37.500004	1
ACGGGTC	60	1.546141E-10	37.500004	5
CTAACGG	30	1.13953465E-4	37.500004	2
GTCGTGC	30	1.13953465E-4	37.500004	19
GTAACGG	30	1.13953465E-4	37.500004	2
CGTTAGG	90	0.0	37.5	2
CTACGAA	90	0.0	37.5	11
ACGGGAC	255	0.0	37.058823	5