SRR3550665_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550665_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	554839
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3154	0.5684531909256559	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	1141	0.2056452412321412	No Hit
CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT	860	0.15499991889539128	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTG	815	0.14688945802295802	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	738	0.13301155830790554	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT	673	0.12129644815883527	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	610	0.10994180293742868	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	25	3.8881877E-5	45.0	1
CGTGCAA	20	7.030128E-4	45.0	10
GCGTTAG	90	0.0	45.0	1
TTACGCG	20	7.030128E-4	45.0	1
TATACGG	20	7.030128E-4	45.0	2
CGATACT	20	7.030128E-4	45.0	10
TGCGTTA	20	7.030128E-4	45.0	34
AATCGGC	20	7.030128E-4	45.0	10
ACGGTAA	20	7.030128E-4	45.0	14
CGGACGT	20	7.030128E-4	45.0	6
ATAGCGG	30	2.1634642E-6	44.999996	2
CGTTTTT	1840	0.0	43.043476	1
TAGTATG	70	0.0	41.785713	1
GTTGTAG	60	3.6379788E-12	41.249996	1
CGTTAGG	115	0.0	41.086956	2
GTTAGCG	45	1.9252184E-8	40.0	1
CGTAAGG	90	0.0	40.0	2
TGTCGCA	45	1.9252184E-8	40.0	39
TAACGCC	40	3.4539153E-7	39.375	12
ACGTAAG	40	3.4539153E-7	39.375	1