SRR3550664_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550664_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	453036
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1767	0.39003522898842474	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1052	0.23221112670957716	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	893	0.19711457809092436	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	849	0.18740232564299525	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	648	0.14303499059677377	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	524	0.11566409733442817	No Hit
ACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	475	0.10484817983559805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAG	25	3.887051E-5	45.0	1
CGGGTAT	40	6.7993824E-9	45.0	6
TCGTTTG	20	7.028757E-4	45.0	1
GTACCGT	20	7.028757E-4	45.0	13
ATTAGCG	20	7.028757E-4	45.0	1
TTGTGCG	40	6.7993824E-9	45.0	1
CTATACT	20	7.028757E-4	45.0	31
CGATTCG	20	7.028757E-4	45.0	10
TTGACGG	85	0.0	45.0	2
CGAATAT	80	0.0	45.0	14
CGGTCTA	20	7.028757E-4	45.0	31
TACCGTT	20	7.028757E-4	45.0	14
CGTATGG	30	2.1625801E-6	44.999996	2
CCAACGG	30	2.1625801E-6	44.999996	2
GCTACGA	85	0.0	42.35294	10
TTAGCGG	75	0.0	42.0	2
TAGCGCG	45	1.9239451E-8	40.0	1
CTACGAA	90	0.0	40.0	11
CTTGCGT	45	1.9239451E-8	40.0	15
TGCGTCT	45	1.9239451E-8	40.0	17